AMCG00000994


Basic Information

Item Value
gene id AMCG00000994
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11840490 ~ 11847160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000994
CGGGCTCCGCACAGCACAGCGCCCGACGAGGCGTTTGCCTGCAGCTCGGGTATTCTGATCCTCGGCGGGCTCCGTAGAGTCGAGCGCAGGGGCTTGTGGGACGGGAGGACATAAAGCAGCGCTACAGCAGCCGCGCCGCGCCGTGAGGGACCCTGTGGAGCCGGACGCGTTTGCGCAGTTTGGGAACCGGCGAGAGCAAAACGTGGACGCCTCATGTTCCGCGGAAGTGCCGCCGGTCCGACCGAGTCAAGGCGCATGCGTGCCCGTGTTTGGGGTTTCGCTTCAGTGTGGTGTAGTTTGCATTATCAGACATTTAAAGATGGCAGAAAACAATCAGGAGATGACGCCCATGGAGAAAAAAGTGGCTGAACAGATTGAGTATTACTTCAGTGATCACAATCTCCCAAGAGACAAATTCCTCAAAGAACAAATACAGCTCGATGATGGATGGGTGTCTCTTGAAACCATGATTAAATTCAACAGGTTGAGCCGACTGACCACGGATTTCAAAGTCATCGTGGAGGCGTTGAAAAAATCCCAGTCTGGACTTCTGGAGATACATGAAGATGGAACCAAAATCAGGAGGTCCCTCGACAAGCCCCTGCCAGAAGTAAACGACGAGTACAAAGATGGAGTGAAACACAGATCGGTCTACATGaaaggcTTTCCCCTGGATGCCACCCTAGATGACTTGAAGGAATGGTTGGATGGCAAGGGAAAAATTGAAAGTATTCAAATGAGAAGGAACTTGCAAAGGCAATTCAAGGGATCGGTATTCATCGTTTTTGATACGGATGCATCCGCAAAGCAGTTCGTCCAGCTGCCGGATTTGAAATATAAGGACAATGAAACGGTTGTCCTTTTAAAGGAAGATTACTATGTGAAGAAAAATGAGGAGCGGAAACAATACAGAGCTGAAGCCAAGGCTAAAGCAAAGCAagagaaagaagaaaagcagaaacaagCCGAAGATGAAGAGATGAAATCTCTGGATGAACAGACCGGCTGCTTGCTGAAGTTTTCAGGAGAACTTGAGCAGACCTCCAGGGAAGACTTCCACGAGATATTTGCTAGCCATGGACAAATCAAATGGATTGATTTCATTAGAGGTGCTAAGGAGGGCACCATCCTATTCAAGGCCAGTGCGAAGGAAGCCCTTGACAAGGCCACCGAGGCTAATGGAGGGAACTTGCAGATCAAGAAAAAGGACATCAAGTGGGAGGTGCTGGAGGGCGACGTGGAGAAAGAGATGCTGAAAAAGATAATCGAAGATCAGCAGGAAACGATGAACAAACGGAGAGGACGAGGTGGTCGGAAATTTGGAGGACGAGGGAGGGGTGGACGCAGAGACCGTGACCGAGGAGGAAGAGATCAGGGAAAAACGCATTACCAAGGGAAGAAGACTAAATTTGATAGTGAAGAAGAGGAGGATGCAGCTCCTGCAAGCCCAAAGAAGAGAGCTCTGGAGGCTAAATCTGAAGATGTTGATGAACCAGCTgccaaacaaatcaaaactgaaatcaaacccgaaatcaaaactgaaaacgGTTCTGAGAAACAGTGATGCAGTCATCTTTATTTGTATGGGAATCTTTTAAATCCATTCCGGTGGAGGCCTCACGTCGTGGAGAAGCGTATGAAATCCACCTCAATGTCAACCTGCAGTGAGAATGTAATGATTGgataaaattgtaaaatatacaacCTTTTTTGTTTGCCCCCCCCACCCTATCTCTCAAATCTTATGGGCACTAGAGTTGGCAGATGTGTGCATGTTGTGATGCAGGATTACAACAATTTGAAGAGGCCTGctagattttattttgtcactTTGGAAACTGATCGGTATATAGTTTTAAAGCGTTGCCTGCTGCAGCATTTGATGCCTTTGCTCACTCCAGGAATTAATTCATGGACAGAGGTTATAAAGCTTATGTTAGTATGTAAGCCTTCTCTCCTTTCAGTCCTTGAGACTACAGCTATCTTGGTAAAAGCGCTGTTacccatttttttgtttttgtttaatgtataaacTAGATTTTTGTATCCaaaccatttcattttgattttggtCATAGGAGTGTATGATCCTGGTTATAAGAAACCTGAATGGCTTCTTCCTCTGTTGCTATCCACCCCTTTTGCCAGTCATGTACActtcctttattaaaaaaaaaaaagtaaaaccttAAGTTGccttcctttttaaaatcatgtttgcAAAGTGCACTGTATCATTAAATTACTGTATAAACCAGCTTAAAGTGAATGGTTACTGGTCTTGCCTACAGTCTGAAACTTACCGATTTCTTTTTATGGAACTTGTATGTTGCTGGCAAGTCGTATCTAAGCTCTGCTAATACTTCCATTTTGACTTTCCAATCACTCGCTTTCTTTTGgatgtgctaaaaacaaatatacatccATTACAATAGAGTGGCTCCGTTCTGTGGACTTCTCACCTACACATTCATTGTAATACTTACTTCTCGTGTTGATGTCTTATGAAGGGAATACACCGCATTGCTTGCCATGTTTAATGCTGTTTTGAGAAAGTGCATGTCCATACCTGGTAATTACAGATGAGAGATTGGGAGCTCCAGATGCCATGAAATGAAGGAAAAAGCCTCTGagaaataacatttgtatttcttcattaaaattCTGAATTGCAATTTATGACCAGAcaactaaaatgtttatatactaTATTCACCCCTCTAAATTAAAGTGCTAATATGCTTCACCAGTGGTAgctgaaatattgtatttacacATTCTCTATGTACAACCCACAGATTAAGGTGGGGTTAATGATGCAAGCACTAACTATTGATTTACTGACCTTTATTGTGTTTGGTTCCAAATGGTGGATTCATGATGACTGTATCAAACTTATTGTAGAATCTGTCGGACTCCAACGAGCAGACGTCACACTGAACCATGTCTATGTTTGTGAGCTCGAACTCTTCTGCATTCCTGCTAAATATCTCCAACGCATCTTCATCAATGTCAAAGCCCACGCACAGCCTTGCATCTAGCATGGCAGCGCCGACGCTGAGAACGCCACAGCCACATCCCAGATCTGCCACCAACCTGCTTTCAATGTCATCGAAGGAGTTGTGGATGTGTGAAAGCCTCACCGGCGATGTGGGGGCTGGTGGGGTACTGCTCGAGAAGCAGCTTTGGGTCTTCAAACACATCGACCTGCTGTAGGCAGCTTTCCAGCTCCTTCAGTTTCATGTCTGCAATTCTTTTATATGGATTAGATTGCAATTAGGACCctgCCATGTGACGTCCTCCTTCGTCTGTTCACCTTCCTTAATCAGGACAAATGTCAcgtaaaagcaaaaaatattgtatatttctctccctctttcaaaTACCCGTAGTCACGTTgttattttgtgctgttttatcGATTGTGCAGTGAAACACATGTAAAGTGCTGTATAGTTTCCATGCTGCAACCCAAGGCGGAAGCACGGAGGGTAAACACGGAGCCACAGCAAAAGCGGTCCGGG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11090 LA, SSB; lupus La protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000994 True 3524 mRNA 0.44 18 11840490 11847160

Neighbor

gene id symbol gene type direction distance location
AMCG00000995 NA coding upstream 597 11826376 ~ 11839893 (+)
AMCG00001001 NA coding upstream 24165 11815603 ~ 11816325 (+)
AMCG00000993 ppig,LOC106586208 coding upstream 29201 11802855 ~ 11811289 (+)
AMCG00000997 NA coding upstream 45040 11786542 ~ 11795450 (+)
AMCG00000996 LOC106581781,LOC105022468 coding upstream 55748 11746159 ~ 11784742 (+)
AMCG00001004 ubr3 coding downstream 1217 11848377 ~ 11872129 (+)
AMCG00001006 NA coding downstream 35484 11882644 ~ 11909312 (+)
AMCG00001005 myo3b coding downstream 78165 11925325 ~ 11933099 (+)
AMCG00001007 myo3b coding downstream 104215 11951375 ~ 11962697 (+)
AMCG00001009 sp5 coding downstream 167554 12014714 ~ 12017222 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 97740 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1395553 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2462901 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2757609 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3200667 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 246981 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 692921 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 758879 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 791825 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 990491 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1686303 10100283 ~ 10154187 (+)
G127134 NA other upstream 3220295 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6374509 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10026333 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 10141917 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 152504 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 441790 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3303115 15150275 ~ 15184392 (+)
G128823 NA other downstream 3561952 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3613372 15460532 ~ 15463853 (+)

Expression


Co-expression Network