AMCG00001002 (myo3b)


Basic Information

Item Value
gene id AMCG00001002
gene name myo3b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11999664 ~ 12011425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001002
TTTTGTCCAGGTCCAGATAGGCAGGCTGAACAGAAGCAACAGAGAACCCCTCGGCGAAGGTGCCAGCAGCCCAAACTGCTCAACAGCCCCGAGGACAGCCTCTACTATAACCAGTTAAATAGAACTCTGGATTATCAAGGGAGCAAGAGGAAGCCGAGAAAACTTGGtcaAATCAAAGTGCTGGATGGAGAGGATGAGTACTACAAATTATTGTCAGCTGTGGAGTCAATCCCTGAGGAAGACAGTTCATCCAATCCTCCTCCCACTCTGTCAAGAGGGCCAGTGTTCGCTCAGAGCTGA
>TU160309
GTAAATGCAGTTTTAGTCAAGGTTAGCAAGCAGAGTAACAAGAGATGAAGAAGAAATGGCCTATTCCGCTGAACACGAACAAAGTCCAGATAGGCAGGCTGAACAGAAGCAACAGAGAACCCCTCGGCGAAGGTGCCAGCAGCCCAAACTGCTCAACAGCCCCGAGGACAGCCTCTACTATAACCAGTTAAATAGAACTCTGGATTATCAAGGGAGCAAGAGGAAGCCGAGAAAACTTGGtcaAATCAAAGTGCTGGATGGAGAGGATGAGTACTACAAATTATTGTCAGCTGTGGAGTCAATCCCTGAGGAAGACAGTTCATCCAATCCTCCTCCCACTCTGTCAAGAGGGCCAGTGTTCGCTCAGAGCTGAGCCTTACAACTAATGTTAAGTTTATgttGCCTTTGTGATGCTACTGACTACCAGCCAAGAATGACGTTATAAAAGCTCTCATCCTTATTTCAAGTTGCACAagattattacttttttaattattataaagacTTTGGAAATGTCTATCTCTAGAATTGGTTTATacaaattttacttttttaagtagttttaatttatacatgGTGTGTTCTGTGCTTTGTCTTCTTctgttaaaacatgtaaaacgaTTGTGCTCCAAATTTATACCACCTAAAGACTATATATCA

Function

symbol description
myo3b Predicted to enable several functions, including ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within protein phosphorylation and visual perception. Predicted to be part of myosin complex. Orthologous to human MYO3B (myosin IIIB).

NR:

description
PREDICTED: myosin-IIIb isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001002 False 300 mRNA 0.50 3 12001008 12002172
TU160309 True 660 TUCP 0.40 5 11999664 12011425

Neighbor

gene id symbol gene type direction distance location
AMCG00001007 myo3b coding upstream 36967 11951375 ~ 11962697 (+)
AMCG00001005 myo3b coding upstream 66565 11925325 ~ 11933099 (+)
AMCG00001006 NA coding upstream 90352 11882644 ~ 11909312 (+)
AMCG00001004 ubr3 coding upstream 127535 11848377 ~ 11872129 (+)
AMCG00000994 NA coding upstream 152504 11840490 ~ 11847160 (+)
AMCG00001009 sp5 coding downstream 3289 12014714 ~ 12017222 (+)
AMCG00001008 NA coding downstream 8380 12019805 ~ 12034616 (+)
AMCG00001003 gad1 coding downstream 28900 12040325 ~ 12062111 (+)
AMCG00001013 NA coding downstream 61078 12072503 ~ 12078897 (+)
AMCG00001010 gorasp2,LOC103354349,LOC106928304,LOC103129211,LOC105930246,LOC102238218 coding downstream 68573 12079998 ~ 12092059 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 256914 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1554727 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2622075 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2916783 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3359841 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 82716 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 528656 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 594614 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 627560 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 826226 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1845477 10100283 ~ 10154187 (+)
G127134 NA other upstream 3379469 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6533683 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10185507 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 10301091 1668845 ~ 1698573 (+)
AMCG00001022 NA other downstream 277525 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3138850 15150275 ~ 15184392 (+)
G128823 NA other downstream 3397687 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3449107 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 6011635 18023060 ~ 18044251 (+)

Expression


Co-expression Network