AMCG00001009 (sp5)


Basic Information

Item Value
gene id AMCG00001009
gene name sp5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12014714 ~ 12017222 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001009
ATGGCTGCGGTGGCTGTTCTGCGGAACGACACTCTCCAAGCTTTTCTCCAGGATCGCACTCCCAACTCGTCACCCGAGACAGCCAAGCACTCCCCTCTGGCCCTTTTAGCAGCCACTTGTAACAGGATTGGGCATCACCACCCTGCGAGTCCATCAGATTTCCTCCAGGTCCCCTATGACCCCAGTCTCGGCTCCCCGTCAAGACTTTTCCACCCTTGGAGTAACGAAGGACTGGGAAACCCACCAGGCAATTCCACTTTGGGACTGTCCCCCAAATCGCAACTCACAGCTCACCTCCAGTCATCGTTTAGCTCCCACCATGAGCTCCCCCTCACCCCGCCAGCGGACCCTGCCTACCCCTATGACTTCTCTCCAGTGAAGATGCTGCATGCTCCTTCATCCATGCAGTCGTTGCAGTCCAGCTGCCCCCCCACATACGTGCCCGCTGTGACTTACGCCGCACCAGCACCTATTGCACCTGCGATGCCAGGCTTTGTCCCGGGACACTCTGGCCTTATTCACCAGCAACCGAGACAACTGTCCCCCAACCCTGGGGAAGACATCCCATGGTGGAGCCTTCAACAAGGAAACCCAGTCAGCCACCCTTCTTCACTTGCCCCTCATCGTTTCCCTCTACAGAGAAGCCTAGTGCTGGGACATTCAGACTTTGCCCAATACCAGACTCAGATAGCCGCCCTCCTGCACACCAAATCCCCCCTTGCCACCGCCAGAAGGACATGGACATTTGAGGTCAAACTGGCCGGTGAATTCCTGAATTTCTATCTCACCTACATACCTAAAGGAgGTGCACTCTGCGTACGCTCTTCATTGAAGTCGTACGGCCGATGA

Function

symbol description
sp5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within bone morphogenesis; cellular response to organic cyclic compound; and post-anal tail morphogenesis. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: transcription factor Sp5 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09195 SP5; transcription factor Sp5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001009 True 849 mRNA 0.56 4 12014714 12017222

Neighbor

gene id symbol gene type direction distance location
AMCG00001007 myo3b coding upstream 52017 11951375 ~ 11962697 (+)
AMCG00001005 myo3b coding upstream 81615 11925325 ~ 11933099 (+)
AMCG00001006 NA coding upstream 105402 11882644 ~ 11909312 (+)
AMCG00001004 ubr3 coding upstream 142585 11848377 ~ 11872129 (+)
AMCG00000994 NA coding upstream 167554 11840490 ~ 11847160 (+)
AMCG00001008 NA coding downstream 2583 12019805 ~ 12034616 (+)
AMCG00001003 gad1 coding downstream 23103 12040325 ~ 12062111 (+)
AMCG00001013 NA coding downstream 55281 12072503 ~ 12078897 (+)
AMCG00001010 gorasp2,LOC103354349,LOC106928304,LOC103129211,LOC105930246,LOC102238218 coding downstream 62776 12079998 ~ 12092059 (+)
AMCG00001012 NA coding downstream 124508 12141730 ~ 12149295 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 271964 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1569777 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2637125 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2931833 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3374891 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 76919 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 522859 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 588817 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 621763 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 820429 12837651 ~ 12841008 (+)
AMCG00001002 myo3b other upstream 3289 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 1860527 10100283 ~ 10154187 (+)
G127134 NA other upstream 3394519 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6548733 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10200557 1805407 ~ 1814157 (+)
AMCG00001022 NA other downstream 271728 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3133053 15150275 ~ 15184392 (+)
G128823 NA other downstream 3391890 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3443310 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 6005838 18023060 ~ 18044251 (+)

Expression


Co-expression Network