AMCG00001098


Basic Information

Item Value
gene id AMCG00001098
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15150275 ~ 15184392 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001098
ATGGTAGGGCACGTGGGTGGAGGTCAGGCCGGGGTTAACTCCACCATCCACAGGCCCAACTTGGTAGGGGACTGTCCAGGGGTCGAGCTGAATGACCTAAGAGGAAGACCTGTGTTGATCATGATCCGAAACAGCAGCAGAAAGTGCCTGAATGATCTGGTTAGCTGGCATCAAGACCAGGCTTTAAACACAACCATACTTATACTGCGAGAGTCTGGGCCAACTGGATTCCTTCTGAAGGAGGAGGGCGAGTCCAagagttttaaaCTAGGTTTGGTGGAAAGACAGATCACCTATATACTTCAGGGACAACACAGAGTACAGACTCCTCGACCAACTGACAGCTCTTCAGAGCTGAAGCAACACACAGGTGTGGAAGATGGATGTGTAAGGCAAAAGGAGATTGATGCTGAAGATGTGTGTCCCATTTGCCAGGAAGAGCTGTTGAAGAAAAGACTGCCTGTTTCATACTGCAGGTATGGGTGTGGCAATAGTGTTCACATCTCCTGCATGAAAATCTGGGCTGACCACCAGACCAGGTCTGAGACAGATACCATGGTAAAGTGCCCCCTCTGTAGGGAGGACTTTTCCTCCATGAAGTTTCTGCTGGAGCAAGTGAAGAATGCCGCCACTCTTGTAACAGCAGCAGAACGACAGCGGCTGGACAGACATCTGGGAATCGCTTGCAACGGCTGCATGGTCTGTCCCATCAGCGGCAAGTGTTTGAACCGCCTGCTGTACCAGCCTCCACTGAACCCCAAGTCAATAGCCTCTGACCTCACCCTGACCCAGCCTGGTCTGATCATTGACACACGG
>TU161370
GGTAACTGCAAACAAACGTTGCGCCTTAGTTGCGGACGGGACCACTGCAGGAAGACCTGTGTTGATCATGATCCGAAACAGCAGCAGAAAGTGCCTGAATGATCTGGTTAGCTGGCATCAAGACCAGGCTTTAAACACAACCATACTTATACTGCGAGAGTCTGGGCCAACTGGATTCCTTCTGAAGGAGGAGGGCGAGTCCAagagttttaaaGTATACTTAGGAGACCCTCACACTTGTACCTGCCCTGCatttctaaaagaaaaagacCTCTGCAGACATATATGTTGGGTTTTATTAAGGAAATTCAGACTGCCTCGAGATCATGAATACTGCTTTCAGCTAGGTTTGGTGGAAAGACAGATCACCTATATACTTCAGGGACAACACAGAGTACAGACTCCTCGACCAACTGACAGCTCTTCAGAGCTGAAGCAACACACAGGTGTGGAAGATGGATGTGTAAGGCAAAAGGAGATTGATGCTGAAGATGTGTGTCCCATTTGCCAGGAAGAGCTGTTGAAGAAAAGACTGCCTGTTTCATACTGCAGGTATGGGTGTGGCAATAGTGTTCACATCTCCTGCATGAAAATCTGGGCTGACCACCAGACCAGGTCTGAGACAGATACCATGGTAAAGTGCCCCCTCTGTAGGGAGGACTTTTCCTCCATGAAGTTTCTGCTGGAGCAAGTGAAGAATGCCGCCACTCTTGTAACAGCAGCAGAACGACAGCGGCTGGACAGACATCTGGGAATCGCTTGCAACGGCTGCATGGTCTGTCCCATCAGCGGCAAGTGTTTGAAATGTACAGTTTGTAGTGATTACCATCTGTGTGAGGAATGTTTCAGAAAGCAGGGCCACCCATCGCATGTTTTCGTTTTCCGTCTGAAGAGGACACTGCGGTGGCGATTGTTGGATCAGGCAGCAGTCTGTGGTCAGCCTCCAAGTGAAGCATTAGGGGATAAGTCAATGGTATCAGATTTTGAATCGATGAAGAAACAAGACAGTTTTACTATGAAGTCTGAAAAGGTCCCTGAACATATTG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001098 False 816 mRNA 0.51 6 15150275 15184392
TU161370 True 1046 TUCP 0.47 9 15169911 15174147

Neighbor

gene id symbol gene type direction distance location
AMCG00001094 calcrl,LOC103374150,LOC105905912,LOC104930425 coding upstream 79304 15061001 ~ 15070971 (+)
AMCG00001095 NA coding upstream 114694 14998017 ~ 15035581 (+)
AMCG00001087 LOC106581929,LOC108435067 coding upstream 422088 14696640 ~ 14728187 (+)
AMCG00001086 NA coding upstream 526424 14619523 ~ 14623851 (+)
AMCG00001088 NA coding upstream 547935 14522664 ~ 14602340 (+)
AMCG00001102 NA coding downstream 45479 15229871 ~ 15241090 (+)
AMCG00001101 NA coding downstream 77359 15261751 ~ 15264010 (+)
AMCG00001103 NA coding downstream 84860 15269252 ~ 15283103 (+)
AMCG00001108 NA coding downstream 110712 15295104 ~ 15318438 (+)
AMCG00001109 NA coding downstream 134558 15318950 ~ 15323639 (+)
G128697 NA non-coding upstream 76373 15071073 ~ 15073902 (+)
G128663 NA non-coding upstream 370834 14776859 ~ 14779441 (+)
G128662 NA non-coding upstream 373552 14773618 ~ 14776723 (+)
G128402 NA non-coding upstream 1065345 14084286 ~ 14084930 (+)
G128294 NA non-coding upstream 1686793 13461666 ~ 13463482 (+)
G128747 NA non-coding downstream 25961 15210353 ~ 15211325 (+)
G128772 NA non-coding downstream 141602 15325994 ~ 15326220 (+)
G128815 NA non-coding downstream 174251 15358643 ~ 15359014 (+)
G128827 NA non-coding downstream 228388 15412780 ~ 15413107 (+)
G128919 NA non-coding downstream 382009 15566401 ~ 15886602 (+)
AMCG00001022 NA other upstream 2765233 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3138850 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 4996088 10100283 ~ 10154187 (+)
G127134 NA other upstream 6530080 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 9684294 5461301 ~ 5465981 (+)
G128823 NA other downstream 224720 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 276140 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2838668 18023060 ~ 18044251 (+)
G129453 NA other downstream 3361501 18545893 ~ 18547915 (+)
G129442 NA other downstream 3370759 18555151 ~ 18558174 (+)

Expression


Co-expression Network