AMCG00001161 (pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579)


Basic Information

Item Value
gene id AMCG00001161
gene name pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17384589 ~ 17398019 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001161
GGGACTCCTGTCACGTGACTACACTCCTTTTACCTCACCACCCAACATGGAATCCAAAGTCTCAGAAGGCGGACTGAATGTTACCCTCACCATCCGTTTGTTGATGCACGGCAAAGAAGTCGGAAGCATTATTGGCAAGaaaggtGAAACAGTAAAGAAAATGCGTGAGGAGAGTGGAGCACGCATTAACATTTCTGAGGGAAACTGTCCAGAGAGAATCGTCACTATCACAGGTCCTACAGATGCAATATTCAAGGCTTTTGCAATGATCGCATACAAGTTTGAAGAGgATATAATCAACTCTATGAGTAACAGCCCTGCCACCAGTAAGCCTCCAGTGACCCTGCGGTTGGTGGTGCCAGCCAGCCAGTGTGGTTCACTGATCGGAAAAGGAGGATCCAAGATCAAAGAGATCAGAGAGtCAACAGGAGCTCAGGTTCAGGTGGCAGGAGACATGTTGCCCAATTCGACGGAGCGTGCAGTCACAATCTCTGGAACCCCCGATGCCATCATTCAATGTGTTAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCAGTCATTTTTTCAGGTGGCCAGGCCTACACAATTCAGGGACAGTATGCCATTCCACACCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACTCCCCTTGGACAGACCACCCCTGCTTTCCCTGGTTTGGATGCCAATCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGGCAGATGTCTGGAGCACAGATCAAAATCGCTAATGCCATGGAAGGCTCAACAGAGCGTCAGATCACCATTACAGGAACCCCCGCCAACATTAGCCTTGCCCAGTACCTCATCAACGCA

Function

symbol description
pcbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).
pcbp1 Enables mRNA binding activity and single-stranded DNA binding activity. Involved in viral RNA genome replication. Located in cytoplasmic ribonucleoprotein granule; cytosol; and nuclear speck.

NR:

description
PREDICTED: poly(rC)-binding protein 3 isoform X4

GO: NA

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001161 True 967 mRNA 0.51 11 17384589 17398019

Neighbor

gene id symbol gene type direction distance location
AMCG00001159 NA coding upstream 76003 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 87911 17270011 ~ 17296678 (+)
AMCG00001154 NA coding upstream 241602 17125328 ~ 17142987 (+)
AMCG00001153 NA coding upstream 263224 17051725 ~ 17121365 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding upstream 368988 17011862 ~ 17015601 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding downstream 23050 17421069 ~ 17421866 (+)
AMCG00001169 NA coding downstream 326229 17724248 ~ 17725586 (+)
AMCG00001170 NA coding downstream 349031 17747050 ~ 17755669 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 374926 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 395374 17793393 ~ 17804682 (+)
G129080 NA non-coding upstream 237520 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 492228 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1322410 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1459779 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1462550 15921674 ~ 15922039 (+)
G129221 NA non-coding downstream 89373 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 293488 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 573990 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1398831 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1690129 19088148 ~ 19090238 (+)
AMCG00001114 NA other upstream 1920736 15460532 ~ 15463853 (+)
G128823 NA other upstream 1963709 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2200197 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4999547 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5373164 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 625041 18023060 ~ 18044251 (+)
G129453 NA other downstream 1147874 18545893 ~ 18547915 (+)
G129442 NA other downstream 1157132 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1490265 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1645285 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_12351325_12366549 PCBP3 coding CI01000009 null 12351325 ~ 12366597 (+)