AMCG00001170


Basic Information

Item Value
gene id AMCG00001170
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17747050 ~ 17755669 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001170
ATGCTGTCAGAGGGCCACAGTTTCGGTGTCGACTACAAGAACAACTGCTTCCTGAAGGATGGAGCGCCGTTCCAGTACATCTCCGGCAGCATCCACTACTCCCGCATCCCGCGAGTCTACTGGAAGGATAGGCTGCTCAAGATGTACATGGCTGGCCTCAATGCCATCCAGACGTATGTGCCCTGGAATTACCACGAGCCCACACCAGGGATCTACAACTTCAGCGGTGACCGGGATCTGGAGCACTTCCTGGACCTGGCCAACCAGACTGGCCTGCTGGTGATCCTGCGGCCAGGCCCTTACATCTGTGCAGAGTGGGAGATGGGTGGGCTTCCGGCCTGGCTTCTCCACAAGCCCAACATTATCCTGCGCTCGGCAGACCCAGATTATCTGCAGGCCGTAGATAGCTGGCTGGCTGTGCTTCTGCCCAAAATGAAGCCTTGGCTTTACAGCAATGGAGGAAACATCATCAGTGTCCAGGTGGAGAACGAGTACGGGAGCTACTTCGCCTGCGACTACAACTACCTCCGCCACCTGCACACGCTGTTCCAGTTATTTCTGGAGGACACCTTCCTGTTTACCACCGACGGCAACACGGACTCAGAGATGGCTTGCGGGACCCTAGAGGGCCTTTACGCCACTATTGACTTTGGGACAGACACCAACATCACCAAAGCTTTTCAACGGCAGCGTCGATTTGAACCAAGTGGTCCCCTGGTAAACTCCGAGTTCTACACAGGCTGGCTGGATCACTGGGGCGACAATCATGCCCAGGTGGGCTTGGAGAAGGTCAGCCAGATGCTGGACGACATGCTGACCCTGGGAGCCAGTGTCAACATGTACATGTTTGAAGGGGGAACTAACTTCGGATACTGGAATGGAGCCGACTACGACACCGGATTCAGGCCGGTGGTGACCAGCTATGACTATGATGCCCCTCTGTCAGAGGCTGGAGACCCCACAGACAAGCTGTTAGCCATCAAGAACGTCATCAGCAAGTTCCGTGCGGTGCCTGAGGGACCCATGCCCCCTGCCACTCCCAAGTACGCCTATGGCTTTGTAACTCTCAAAAAGTATTACGGATACGTTCTGTACAGGACGAAACTGCCCAGGACACTCGAGGACAAGACGCCCCTCATCTCCCCTCTGAATGGCGTTCATGACCGTGGCTACGTCCTAGTCAATGGGGTCTTCCAGGGtttgctggagagagagacaattcTGGTGCTGAATGTGACTGGAAAAGAAGGTGACACCTTGGACATCCTGGTGGAGAACATGGGCAGAGTCAACTTCGGACCCTATATCAATGACCTTAAGGGTCTTGTGAGCAACCTGTACCTGGGGCAGGATATCCTCTCTGACTGGCTGATCTACTCTCTTGACATCGATGGGGCCATAGCCACTGGCTGGCCCCATGCCCAGCCTCAACACACCGATCCCACAGCCAGCAGTCAGGACTGTAAAGGACCAGTGTTCTATATGGGCACCCTGGAGCCAACGGGGCTGGCCTGGGACACCTTTCTGAAGCTCAGAGGCTGGACCAAGGGACAAGTGTGGATTAACGGGGTGAATCTGGGACGATACTGGCCGCAGAAGGGTCCCCAGCAGACAATGTATGTCCCAGGACCTCTGCTCAGCACCTCCCAGCCTAACAACATCACTGTCCTGGAGCTCGAGGAAGTGCCCTCTGATCCCCGCGTCTTGTTCATGGACCGTGCCCAGCTCAACAGATCCACAGAGAGGTCCTGACACCTCATTCACCCTGAAACCCAGAGAGACAGGACGAGCTTCAGTCTCCAGTCCTTCTCTCAGCGCATTCAGGATTAATTCCACAGAACTATCCAATGCCATCCTGCCTTCGTCATATATCTAGGCCTACTTActcctttttcattgttttttttattttgaaaggacAGGAATTACTTTCACACTTCAGTTTAAGCAGTTTTCCTGCTGCTTCGTGACAGACTCTAAAAAGGCTTTTGTTGGAAATAATGTTTGACTATAGCTTCATTCGTCTGAGCTGTagagaaaacatttataaacacagTCTCACGCATTGAGGCTTCACCTCACGCTCTCACGCCCTGTTGCTAAAATCTCATGCATTTCCACAAAAATATTATGTGCGCATCAATCCACCCCCCCAACAAATATGCATGCCTCCCCCAGCTCAACAAATACGCGCACACCCCCACAGGCTGCTGGTTTTGCCAGTGGGAGCAGTTTCTGtccctgcattttttttaagtgacaaATCTCACGCATTGTTTTcaaaacttgagagctatgtAAAGTAATAAGAAACTGTGTTTAACATCAGGTGATTGGTAAAAGATTCTTTTCTGCATTTACCAAGAGAAACTGTAACGGGTTAAAGGAGATTTTGCTAATGGCAGTGTGGGTttgaaaaatagatttaaaaacaaatgttgcacAGGAGAACAAAGTCTTGACATGCCTGTTCAATTTTAATAGATAGCTCTGGAAGCAATTTTTTAAGAATGAATTTTCCAAGGAATGTTGCTGCCTCAAAAGCAGGTGTGATTTTTGTACAAGgactttagtttttaatgttggacgattctttcaattaaaaactctTGCATAAAGTATCCTTTGTGTAAGTGTTTAAAAGACTGCTATCGATCAACATTGTACTGCTGATGTGTGGAAGCTGTGGCCAGTACAATGTGTGAAAGGTACCGTgctcaattcaaaattaatttttc

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG:

id description
K12309 GLB1, ELNR1; beta-galactosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001170 True 2738 mRNA 0.50 15 17747050 17755669

Neighbor

gene id symbol gene type direction distance location
AMCG00001169 NA coding upstream 21464 17724248 ~ 17725586 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 325184 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 349031 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 438464 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 450372 17270011 ~ 17296678 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 17276 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 37724 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 102683 17858352 ~ 17866887 (+)
AMCG00001173 NA coding downstream 116848 17872517 ~ 17880389 (+)
AMCG00001178 tra2b,LOC108258698 coding downstream 134814 17890483 ~ 17897403 (+)
G129255 NA non-coding upstream 54524 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 196259 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 599981 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 854689 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1684871 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 216340 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1041181 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1332479 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1350043 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1617354 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2283197 15460532 ~ 15463853 (+)
G128823 NA other upstream 2326170 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2562658 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5362008 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5735625 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 267391 18023060 ~ 18044251 (+)
G129453 NA other downstream 790224 18545893 ~ 18547915 (+)
G129442 NA other downstream 799482 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1132615 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1287635 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location