AMCG00001219


Basic Information

Item Value
gene id AMCG00001219
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19231063 ~ 19243511 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001219
GAAATAGATGAATGTCTTAAAGACTCACCCAAATTCAGGGGAGCAATAGAGGAGGCAGAAGCAGATCTGTGTTTACTGGAGTCCAAGCTGAATAACGCCGGCCTGACGATATTTTCCAAAAGCAATCAacctAATGACCAAGCCCAGAGGTCTGTTCGGGCACAGCTTCAGACATTCGTCACAGAGGACCTCTCTAAATTCAAAAATTCCAAGAAGCACTTTGACAAGGTGAGTAAAGAGAAGGAGGTCGCACTGGTGAAGAATGCCCAGGCTGCACGCAACAAACAGCACAAAGCAGAGGAGGCCACCTACATCCTCAATGCAACCCAGAAGAGCTTCAGACGCACTACTGTTGACTATGTACAACAGATTAATGTCCTGCAATCCAAGAGATCTGAAGTCCTCAGATCGCTGGAGCAGCTTGTGGTTGATGAAGCTAAGCAGAAGTGGGACATTGAGCAGAATCACTCCACCATCCAGCAGGAGGACATCTCGATGAATGAGACCAAAGTGGATCACAGTACGGACACAGACAATGGAATTGCCATGGAGGGGTATCTCTTCAAAAGAGCCCACAACCGCTTCAAAACATGGCAGCGGAGCTACATGTTGCAGGCAGACTCTGAGGATCTGAGAAAGGACTGGATCCAAGCTATTCAGAACAGCATTGTCACTGCGTTTGAAGAGGACATCTCGACGAATGAGACTAAAGTGGATCACAGTGCGGACACAGACAATGGAATTGCCATGGAGGGGTATCTCTTCAAAAGATCCCACAACCGCTTCAGAACATGGCACGGGAGGTGCTGGTTCTCCATCCAGAACAATCAGCTGGTGTACCAGAAGACATTGAAGGATAAGCCCACTGTGGTCATTGCGGACATGAGGCTGTGTACAATGAAACCCAGTGAGGACAGCCAGCGACGCTTCTGTTTTGAGGTCATCTCTCCTAGCAAGAGCTACATGTTGCAGGCAGACTCTGAGGATCTGAGAAAGGACTGGATCCAAGCTATTCAGAACAGCATTGTCACTGCGTTCGAAGAGAAGATGGACCAGAAGCAGATGGGTATGAAGAGGAATGGGAAAAGTGTCTTGAAACAGGTGCTTTCCATCCCGGGTAATGCCAACTGCTGCGACTGTGGGAATCCAGACCCCAGGTGGGCCAGCATCAACCTGGGAATCACATTGTGCATCGAGTGTTCCGGCATCCACAGGAGTTTAGGTGTCCACATTTCCAAAGTGCGGTCTCTGACATTGGATAACTGGGAACCTGAATCAATCGAGCTGATGTGTGAGCTGGGGAACGGAGTGATAAATGATATTTATGAAGCTCGGAGGGAGGAGCTGGATGCTGAAAAGCCACAGGCCGGAAATCCAAGGGAAAAGATCGAGGCCTACATCAGAGCCAAGtacatcaacaaggcatttgtTCCAAAGGACACCGCAGCAGAGGTCAAAGTCTGCCTGCAAGGCACTGAAGTCAACTGTGTCAACAGTGAGGACAAAAACAGGACTCCCCTCATACAGGCTGTACAGGTGGCAAGTGTGTTTATTCCTGAAGAGAGGGGCCAGTTGGGTGTGGCCAGAGATGCAGAGAACGGGCAATATTCCCCCAGCAGTCACACTGAGGTGCAGTACAGGAAGTACATTCAGGACTGCAGCTTGAAGAGTCTTACAATTAATGTGTAGGACTTGTGACAGTGTTGGGGGGTCTGCTGACATTGCCAGGACACTCCACACTAACACTGGTATACTGAGATGCACTATATgctgagacgcacacaatatacACTGAGATGCACTATATGttatatatataaataatgtaaaattcaGTGGAATGTACATTTTGGGGATTTATCTTTTATATTTAGTACGTATTTACTATTTTCTTATATAACAAAAAAGTTTGATTGTAATAACTTTCCTGCatgtaatgaaatatttttgACGTTTTCCAGTTTACATGttaccaaaatacattttctaaatattgaaatgtattccaTATGAAGTGTTGTGAATAAATTGcatattcaccccccttggcagttttcctattttgttgccttacaacctggaattaaaatagatttttttgtgggtttgtatcatttgatttacacaacatgcctaccactttgaagatgcaaaatatttttattgtgaaacaaacaagaaataagacaaaaaaacagaaaacttgagtaTTGTCTACTCACCCCCCAAGTACTTGCAAGTCagtactttgtagagccaccttttgcagcaattacttctgcaagtctcttggggtacgtctctataagcttggcacatctaacCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001219 True 2326 mRNA 0.45 21 19231063 19243511

Neighbor

gene id symbol gene type direction distance location
AMCG00001220 NA coding upstream 38966 19190051 ~ 19192097 (+)
AMCG00001221 NA coding upstream 44647 19161641 ~ 19186416 (+)
AMCG00001209 NA coding upstream 92446 19133035 ~ 19138617 (+)
AMCG00001210 NA coding upstream 100786 19124062 ~ 19130277 (+)
AMCG00001212 NA coding upstream 136529 19094157 ~ 19094534 (+)
AMCG00001228 NA coding downstream 862544 20106055 ~ 20111585 (+)
AMCG00001226 NA coding downstream 887976 20131487 ~ 20151385 (+)
AMCG00001227 NA coding downstream 921494 20165005 ~ 20190996 (+)
AMCG00001230 NA coding downstream 1359564 20603075 ~ 20608903 (+)
AMCG00001234 NA coding downstream 1443979 20687490 ~ 20699600 (+)
G129609 NA non-coding upstream 122326 19105712 ~ 19108737 (+)
G129597 NA non-coding upstream 140825 19088148 ~ 19090238 (+)
G129552 NA non-coding upstream 429023 18796850 ~ 18802040 (+)
G129343 NA non-coding upstream 1254127 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 1538537 17691507 ~ 17692526 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 129512 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 394091 19637602 ~ 19653509 (+)
G129695 NA non-coding downstream 537739 19781250 ~ 19781607 (+)
G129696 NA non-coding downstream 538136 19781647 ~ 19781862 (+)
G129708 LOC107575789 non-coding downstream 751516 19995027 ~ 20095067 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 88918 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 341339 18888284 ~ 18889724 (+)
G129442 NA other upstream 672889 18555151 ~ 18558174 (+)
G129453 NA other upstream 683148 18545893 ~ 18547915 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 1186812 18023060 ~ 18044251 (+)
AMCG00001223 s100b,LOC106574292 other downstream 234749 19478260 ~ 19492344 (+)
AMCG00001229 NA other downstream 1220852 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 1367761 20611272 ~ 20676857 (+)
AMCG00001241 NA other downstream 1662860 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 1698561 20942072 ~ 20942397 (+)

Expression


Co-expression Network