AMCG00001223 (s100b,LOC106574292)


Basic Information

Item Value
gene id AMCG00001223
gene name s100b,LOC106574292
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19478260 ~ 19492344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001223
ATGGGGATCTGCGTAGCCAGGAGGACGCAGAAGAAAAAATCGGCCACCGACAGGTTGAGGACATACGTGAGGAAGCCACTGCGTTTCATCTGGAAGCCCAAGACCCAGATCACAGCTCCATTCGCCAGCCCCCCAGCCACGATGAAGGCCACGCTCAGACACACATCTGTCCACATGGATGAGTATCTGGCACCACTGGAGCTATTGTTGGCACACTTTTCTGAAGAGAAGCAAGACCAAACAAAGCGAGGCCTCTCGATTGGACAGAGACGGATGCCGCTGATTGGAGAACAGCCGCCAAGCCCCCATGGTCTGCGGCCAGGTAGTGAGTCAGCCACTTGGCAAACCTTTTCAGATCCGCAGGCAGTGAATGTGGGGGGGAATGCCATGGAGGGAGAGCACAGTGCTATGGCATTGGCCAAACAAGGTCTGGTGGAAGTCTATTATGAGAAGAGCAGCTATCCCTGGGATCTTTTTAACAGGAGGAAGTTGTCAActgTAGGCCTTGCTTTAAAAATGAGCGATTTAGAAAATTCCTTGGCGACCGTTATTGAGGTATTTCATAAATATTCTGAAAAGGAGGGAGACAAACATAAACTGAAGAAAAGTGAACTGAAAGATCTGATCAACAATGAGCTATCAATGTTTTTGGGGCAAATCAAAGACCAGGCCACAATGGACAGTTTAATGGAGAGCCTGGACACGGACGGGGACTCCGAATGCGACTTCCAGGAATTCATGACCTTCATCACCATGGTGACCATTTGCTGCCATGAGTTCTTTGAACACCACGAAGACGAATCACTCTCCTCGCTCCAGTGCTTGCCAGTTCGCttcttcctgttcttctctgcCATGACGATGGCTGCCACCACAGTGATGACCACAGTGAGGGTGATGATCAAAACCGTCACTGTCTCCCCGATGCACAACTGGCTGTCCACCTCCTCCAGCTTGCGGCCTCTGAGCTCTTCTGGTTTCTTGCAGGTTGCTGTAGTCATCCAAGGTGAGCCTCTGCACGTTCTGCAGCTTCCTGAAGACCCGCTGGAGGTCACAGTCGCAGTACCACTGGTTGTCGGCCAGCAGGAGGTGCAGCTGCCTGAGCTGAGTCAAGTGCTCGAACGCCCTGATCTCAATTAA
>TU162623
TTTCCCAGCTCATTGGTCAGTGGGATCTGGAGAAGGGCTGCAGTTATTAAGGGCACTCTCCACGCCCAGCTTATAAAAAGACTTTGGCTTCTCAGGGAAGCTGTACTTTCTGAAAAACTTTCAACTTGGCTTTGCTGAGctgTAGGCCTTGCTTTAAAAATGAGCGATTTAGAAAATTCCTTGGCGACCGTTATTGAGGTATTTCATAAATATTCTGAAAAGGAGGGAGACAAACATAAACTGAAGAAAAGTGAACTGAAAGATCTGATCAACAATGAGCTATCAATGTTTTTGGGGCAAATCAAAGACCAGGCCACAATGGACAGTTTAATGGAGAGCCTGGACACGGACGGGGACTCCGAATGCGACTTCCAGGAATTCATGACCTTCATCACCATGGTGACCATTTGCTGCCATGAGTTCTTTGAACACCACGAAGACGAGTAGGCACTCGTACGCCACAAATCTCTCTAGTGTAACAAAAGCGATGCAGGACATTTAACAATCTTACTTAATGTTTTCAGTTGGTTGGGAGGGTGGTCTAATAAGATTTAGCATCTCCGGAGCTATGTTGTCTTGGGTGGTGCAGTGGAAGTGTGGCTGTCTTTGTTTTAGGTTCACCGAAGTGCCTAAACATGCTCTTTCAGTCCTAAATTGAAGCATAATCCTGTAATAAATTAGCAGAAAATCTGAACATGTATTTGGGAAaattaaacatatgtatatattttgttcttttaccACTTAATTTCCCCTATGTCCTGGTCAGTGCTGCATAAAACCCTTCTGTGTTATTTGGCATTGGAAATGGCACTCAAAACTCCACTTAAACATAGAACACAACTTTACTCCTACGTccagtttaaaatattaatttccccagtgcagtgcagtgcagtataacTGATCTTGTGTACAAGCCGACCAACCACAGAGCCAAACAATGGAAGTATTGCAAGAAGGCAGATTTTGAATTGAATGCATAGAATAGTTACAAATTTACTGACAGTACCACAGAGAAAAAGGCAAGGTACATAActtaataacctttttttgtaaaaagaaaaaagaaatcaatctAGGAGTTGGCTAAAACGCAATTTCCTGCGACGTTACAATGTATTAAGGCATTGGAACTCTTGCAAGGTATATTCTGATGCTTTGAAGGATTGCTGCTATGTATTATGATTGTTAATAAACATGGTCTGTACAAATATTCTCTGTGTCCGTTGTCATACCACATGTG

Function

symbol description
s100b Predicted to enable several functions, including RAGE receptor binding activity; S100 protein binding activity; and calcium-dependent protein binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of cell population proliferation. Predicted to be active in cytoplasm; extracellular space; and nucleus. Is expressed in several structures, including digestive system; heart; integument; nervous system; and renal system. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; aspergillosis; and schizophrenia. Orthologous to human S100B (S100 calcium binding protein B).

NR:

description
PREDICTED: protein S100-B

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001223 False 1140 mRNA 0.52 9 19478260 19492344
TU162623 True 1246 TUCP 0.40 3 19486138 19489600

Neighbor

gene id symbol gene type direction distance location
AMCG00001219 NA coding upstream 234749 19231063 ~ 19243511 (+)
AMCG00001220 NA coding upstream 286163 19190051 ~ 19192097 (+)
AMCG00001221 NA coding upstream 291844 19161641 ~ 19186416 (+)
AMCG00001209 NA coding upstream 339643 19133035 ~ 19138617 (+)
AMCG00001210 NA coding upstream 347983 19124062 ~ 19130277 (+)
AMCG00001228 NA coding downstream 613711 20106055 ~ 20111585 (+)
AMCG00001226 NA coding downstream 639143 20131487 ~ 20151385 (+)
AMCG00001227 NA coding downstream 672661 20165005 ~ 20190996 (+)
AMCG00001230 NA coding downstream 1110731 20603075 ~ 20608903 (+)
AMCG00001234 NA coding downstream 1195146 20687490 ~ 20699600 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding upstream 100347 19373023 ~ 19377913 (+)
G129609 NA non-coding upstream 369523 19105712 ~ 19108737 (+)
G129597 NA non-coding upstream 388022 19088148 ~ 19090238 (+)
G129552 NA non-coding upstream 676220 18796850 ~ 18802040 (+)
G129343 NA non-coding upstream 1501324 17972009 ~ 17976936 (+)
G129689 NA non-coding downstream 145258 19637602 ~ 19653509 (+)
G129695 NA non-coding downstream 288906 19781250 ~ 19781607 (+)
G129696 NA non-coding downstream 289303 19781647 ~ 19781862 (+)
G129708 LOC107575789 non-coding downstream 502683 19995027 ~ 20095067 (+)
G129719 NA non-coding downstream 813299 20305643 ~ 20305857 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 336115 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 588536 18888284 ~ 18889724 (+)
G129442 NA other upstream 920086 18555151 ~ 18558174 (+)
G129453 NA other upstream 930345 18545893 ~ 18547915 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 1434009 18023060 ~ 18044251 (+)
AMCG00001229 NA other downstream 972019 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 1118928 20611272 ~ 20676857 (+)
AMCG00001241 NA other downstream 1414027 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 1449728 20942072 ~ 20942397 (+)
G129877 NA other downstream 1584791 21077135 ~ 21078870 (+)

Expression


Co-expression Network