AMCG00001227


Basic Information

Item Value
gene id AMCG00001227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20165005 ~ 20190996 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001227
ATGGTGGTCAGTGTTCTCAGTCCTGGAGTACCTTCTACTGTGACTGCTCTGGTACGGGCTACACTGGGGCAACCTGCCATGACTGTGACGATCTACGAGCCGTCATGTGAAGCCTACAGACAAACGGGAAGCTCTTCTGGATACTTCTCCATTGATTCGGATGGAAGTGGTCCACTGGGGCCGACCCTGGTATATTGCAACATGACAGAGGACAGAGTGTGGACGGTAATTCACCACAACAGCACTGAGCCCACCAGAGTCCAAGGCTCCAGTCTCCAGAAGCCCTACATGATGCAGTTCAACTACAGCACGAGTCCAGAGCAGCTGCTGGCACTGGTCAGTGGGGCCGAGCAGTGTCAGCAGGAGATCGTCTACCGCTGCAGGAAGTCCCGCTTACTCAACACACGGGATGGCACTCCGTTCTCGTGGTGGGTGGGCAGAAGTGGAGAGAGACATACCTATTGGGGAGGCTCCTTGCCGGGGATCCAGCAGTGCTCCTGCAATCTGGAAGAAAACTGCATCGACATGAACTACTTCTGCAACTGTGATGCAGACCGAGAGGAATGGACCAATGACACAGGCCTCCTGTCCTATAAAGATCACTTGCCTGTGAATCAGGTTGTGATCGGAGACACGAGCAGACCTGGATCAGAAGCAATTTACCGAGTGGGACCTCTCCGTTGCTATGGGGACAGGAATTTTTGGAATGCAGCCACTTTTTACGAAGAGTCGTCATACCTTCACTTCCCCACCTTCCATGCCGAGCTCAGCGCCGACATTTCTTTCTACTTCAAGACCACAGCGGATTCAGGCGTTTTCCTGGAGAACCTGGGAATCAAAGACTTCATAAGGGTTGAACTGAGCTCCCCTTCGGTGTTGGCCTTTTCGTTCGACGTGGGGAACGGCCCCATGGAGCTCCTGGTGAAGTCGCCCGTCCCTCTGAATGACAAGCAGTGGCACTACGTTAGGGCAGAGCGCAACATCAAGGAGGCCTCTCTGCAGGTCGACCAGCTGCCCATCAGATTCCACGAGGCTCCGTCTGAAGGGCACTTCCGCCTGCAGCTCAACAGCCAGCTGTTTGTAGGAGGAACAGCGTCCCGACAGAAGGGGTTTCTGGGATGCGTACGGGCTTTGACCTTGAATGGCTTGACCCTTGACTTGGAGGAGAGGGCAAAGATGACCCCAGGGGTCAGTGCCGGCTGCCAGGGTCATTGCAGCAGCTATGGGAGCCACTGCCACAACCGAGGAAAGTGCATTGAGAAGAAGAACGGCTACTCCTGCGACTGCACCCACTCGGCTTACGGAGGACCCTTTTGCAAGAAAGAGGTCTCTGTCTTCTTTGAAGCTGGCTCCTCTGTGACCTACACCTTCCAGGAACCGTTCTCCGTCGTTGGGAATAAGAGCGCTCAGTCTTCTGCCATCTACGCCGAAATAAGCAAGTCCAGAGAAAACATTGCCTTCAGCTTCCTGACGACACATACGCCAGCCATGTTGTTCTCGGTCAGCACGTATTACCAGCAGTACATGGCTATCATCTTAGCCCAAAATGGGAGCTTACAGATCTGGTACCAACTGAACAATGAGAGGAAGCCTGATGTATTCTTCCCTGGAACCACCAACCTGGCAAACGGGCAGCTACACTGGGTTCGAGTCCATCGGGAAGGGAAATACGTATACGTCCAGATTGACCAGGATGTAAACACCAAATATAGCCTATCTTCAGACACTGAGTTGAATGCCATCAAATCTCTAAGTTTGGGCAAAGTCACAGACAGTGCTGGTGTGGATCAGGAGGTGGTGCTGGCCAGACTGAAGGGTTTCCTCGGCTGTCTCTCCTCGGTCCAGTTCAATCAGGTGGCTCCTCTGAAAGTCGCGCTGCTCCGTGGCGGCAGCTCCCTGGTCACGGTGAGGGGGCGCCTTGTGGAGTCCAACTGTGGTGCAGCCAGCATGGCCGACTTAAACACCTACACCACCACGCACTCCCTGTCAGATCATTCAGAGAAAGTCGACAGAGGGAAAGAACCCCTAACCAATGCAATGCAAAGGGTCATCGCAGTCGTGATTTTCATCACACTCTGCATTGTGGGCATCATGACCCGCTTCCTCTACCAGCACAGAAGAGGTCAGCAGACGTCCGCTGTGAAGGACAAGGAGCATTGTCACGGCCTGGAGCCCGCTTATCGAACCGAGCTGGACCTCCAGAACTCAGTCCGTGACAGTAGGAAGGAGTATTTCATCTGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001227 True 2241 mRNA 0.54 14 20165005 20190996

Neighbor

gene id symbol gene type direction distance location
AMCG00001226 NA coding upstream 13620 20131487 ~ 20151385 (+)
AMCG00001228 NA coding upstream 53420 20106055 ~ 20111585 (+)
AMCG00001219 NA coding upstream 921494 19231063 ~ 19243511 (+)
AMCG00001220 NA coding upstream 972908 19190051 ~ 19192097 (+)
AMCG00001221 NA coding upstream 978589 19161641 ~ 19186416 (+)
AMCG00001230 NA coding downstream 412079 20603075 ~ 20608903 (+)
AMCG00001234 NA coding downstream 496494 20687490 ~ 20699600 (+)
AMCG00001237 ahr1b,LOC107600975,LOC107586968,LOC107751479,LOC107687868,LOC107653601 coding downstream 517291 20708287 ~ 20714482 (+)
AMCG00001235 NA coding downstream 558806 20749802 ~ 20778646 (+)
AMCG00001240 NA coding downstream 652122 20843118 ~ 20844227 (+)
G129708 LOC107575789 non-coding upstream 69938 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 383143 19781647 ~ 19781862 (+)
G129695 NA non-coding upstream 383398 19781250 ~ 19781607 (+)
G129689 NA non-coding upstream 511496 19637602 ~ 19653509 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding upstream 787092 19373023 ~ 19377913 (+)
G129719 NA non-coding downstream 114647 20305643 ~ 20305857 (+)
G129756 NA non-coding downstream 405435 20596431 ~ 20596752 (+)
G129904 NA non-coding downstream 1050341 21241337 ~ 21241568 (+)
G129961 NA non-coding downstream 1217938 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 1265023 21456019 ~ 21456860 (+)
AMCG00001223 s100b,LOC106574292 other upstream 672661 19478260 ~ 19492344 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 1022860 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 1275281 18888284 ~ 18889724 (+)
G129442 NA other upstream 1606831 18555151 ~ 18558174 (+)
G129453 NA other upstream 1617090 18545893 ~ 18547915 (+)
AMCG00001229 NA other downstream 273367 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 420276 20611272 ~ 20676857 (+)
AMCG00001241 NA other downstream 715375 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 751076 20942072 ~ 20942397 (+)
G129877 NA other downstream 886139 21077135 ~ 21078870 (+)

Expression


Co-expression Network