AMCG00001235


Basic Information

Item Value
gene id AMCG00001235
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20749802 ~ 20778646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001235
GCCCTGAAGAACCGCAGTTGCAAGGGGGTAACGGCCAATACAAGCAACCATGACAACAACAAAGATGCGGGACTGGTGGACAGTTGGCTGCCTGAGGGTGAACTTCTACTGCAGGCCCTCAATGGTTTTGTACTGGTCATCAGCTCAGAAGGACTCATCTTTTACGCTTCTCACACCATTCAAGACTACCTCGGATTTCATCAGACAGATGTGATGCACCAGAGTGTCTTCGAGTTGATCCACACCGAGGACCAGCAGGAGTTTCGGAAGAACTTGCACTGGGCCCTCAACCCTCCGTCTGTTGCCGAAGAAGAGGCCTCTCCACCATGCGAGAACGGAGAAGCGAATCCGTCGTTGATCACCTATAACCCAGACCAGCTGCCCCCAGAAAACTCTTCGTTCCTGGAGCGGAGTTTCGTGTGCCGGTTCCGTTGCCTATTAGACAACTCTTCAGGTTTTCTGGTGCTTAACCTGCTGGGGCGATTGAAGTTCCTCCACGGGCAGAACCGAAGGGCAGAGGATGGCTGCCCAGTCCCACCCCAGTTGGCTCTATTTGCCATCGCCACGCCTCTTCAGCCACCATCCATCCTTGAGATTAGGACCAAAAACATGATcttcagaacaaaacacaagctGGACTTCACACCAATGGCCTGCGATGCTAAGGGTAAAATCGTCCTGGGCTACACTGAAGCAGAGCTGCGCGCTCGGGGCACGGGTTACCAGTTCATCCATGCAGCCGACATGCTGTACTGTGCGGAGAATCACGTCCGGATGATCAAGACCGGAGAGAGCGGTCTGACCGTCTTCCGCCTTCTGACCAAGGAGAACCGCTGGAAATGGGTCCAGGCCAATGCTAGGCTGGTGTATAAGAACGGCAAGCCGGATTATATCATTGCCACACAGAGGCCTCTTGTggaggaggaaggaggggaGCACCTCAGGAAGCGTTCCATGCACCTCCCGTTCACCTTTGCCACCGGAGAAGCCCTGCTGTATCAGACCAGCTACCCCTTAACAGGCTTTCCAGATGCCTTCCAAGGAAAAGGGAAGGGTGGCAAATCCAAAAATAATTCTCGGAACAAGGCAGACAAAAATGAGAAGGAGAGCAACGTGGATCCCAACTCCCTGCTTGGGGCCATGATGAGGCAGAACGAGTCTGTGTATGTCTCCCACCCCGCCCTGGAGCCCAAGTTCTCCTTTAACAGCAGCCTATTCAGCGAGCCGGGAGGCTCCTCCAGCTGTGCCCCCCCATCAGGAGAGAGCTGGAGCCTGGTTCCCAACAGCGTCACGGAACTCAAGCCAGAGCTGCCCAGTTTTGACCCCCTTTTGTCAACATTGGACTCCTTGTGCCTGGACAGCGATGAAAACTGCTCCAACAATGAGCTGTTCAGCGCGCTGGAGAACCTGGGGCTGAACGCCGAGGACTTGGAGCTCCTCCTGCTGGATGAGAGGATGATCAGGGTGGAGATGGACCAAGACTACATCCCCTCTCTCAATGACCTTCTGACCAACAATGAGATTCTGTCCTTCATCCACGACTCTCTAGAGAGCAGAACTGAAGAGGGTGGCGGCAGTATCGCACTGCCCTGCCCTCAGCCTGACCCCCCACAGGCCATGTCCAAACAGCCATGTATGCCCCACGCACAGGAAGTGCCACCTCAGTACCTCGACTACAGGCCACAGCAGAAACAGCCCATCCTTCAGCTGTCTCAGCAAATGCAAGAGCACCTCAAGATGCAGGTGAAGGAGCAACCCTGGGGTCAACATCTGCAGAACTCTTCGGAGACGCAGTTGCAGATACTGGGCCAGCCGAGCCCCGCCCACGAGCAGCCTCAGACCTCAGACAGTGTGCAGCACTGGGACCGCACCCTCCAAAACGGACACTGGATCACACAGCACATGCAAATGAGTGTTGGAATACAGGGCCAAAGTGTGTCCCAGGTGGGCTTGGACCACCTCTCGCACCAGCAGTCCGTGTACAATGGGACTGCAGACCCCAGCGTTCAGGCACAACTGCACCAGCAGCGCAAGCAGCAGCAGAATCAGCTCTTGCTCCAGCTGCAGTCTCAGTGTCACTTCAAGCAAAAAGCCAACGGCAGTGCTCCTGTGAATGGGACGTACAGTTCAGTAAACCAGCAGTCGATGTTGGACCACCAGTGGCAGGGTTATAGCTACACCCCAGTAGCCCACCACAGCCATGTGGAGCTGCCAGCAAATGTGCCTGGCTTTAACGACGGGCAGGAGGTCAGCTTTCCACAGGTTCAGGCTTCAGGAGTTTCCCACATGGATTACAACATGAGTGGGATACCTGGGATGGATTTTACAATGAATGGTGGCATCTCTGAAGATGGCACCCAATATCAGGGGGTGGTGGCCACTGCTTCTTCCTACCAGGTGATATctcagaagcagcagcagcagcagcagcgagcACCCCAAGTGTCAACAACGTGCTTCTCTCAATATCAACCTCAGGACACCTCTCTGGAGCAGATTTTAGGGATGGGACAGACCCAGCAGCTGCCTTCTCTGGAATCCTACGGAATGTTTACGACCGCAGTTCCACAGGACGGAACACCGAGCAAGGTATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001235 True 2595 mRNA 0.55 8 20749802 20778646

Neighbor

gene id symbol gene type direction distance location
AMCG00001237 ahr1b,LOC107600975,LOC107586968,LOC107751479,LOC107687868,LOC107653601 coding upstream 35320 20708287 ~ 20714482 (+)
AMCG00001234 NA coding upstream 50202 20687490 ~ 20699600 (+)
AMCG00001230 NA coding upstream 140899 20603075 ~ 20608903 (+)
AMCG00001227 NA coding upstream 558806 20165005 ~ 20190996 (+)
AMCG00001226 NA coding upstream 598417 20131487 ~ 20151385 (+)
AMCG00001240 NA coding downstream 64472 20843118 ~ 20844227 (+)
AMCG00001238 NA coding downstream 69124 20847770 ~ 20856344 (+)
AMCG00001239 NA coding downstream 79966 20858612 ~ 20871643 (+)
AMCG00001243 gls,LOC105022419,LOC102789803 coding downstream 190070 20968716 ~ 20995462 (+)
AMCG00001248 NA coding downstream 336629 21115275 ~ 21118948 (+)
G129756 NA non-coding upstream 153050 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 443945 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 654735 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 967940 19781647 ~ 19781862 (+)
G129695 NA non-coding upstream 968195 19781250 ~ 19781607 (+)
G129904 NA non-coding downstream 462691 21241337 ~ 21241568 (+)
G129961 NA non-coding downstream 630288 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 677373 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 762817 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 772784 21551430 ~ 21554095 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 72945 20611272 ~ 20676857 (+)
AMCG00001229 NA other upstream 253434 20464363 ~ 20496368 (+)
AMCG00001223 s100b,LOC106574292 other upstream 1257458 19478260 ~ 19492344 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 1607657 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 1860078 18888284 ~ 18889724 (+)
AMCG00001241 NA other downstream 127725 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 163426 20942072 ~ 20942397 (+)
G129877 NA other downstream 298489 21077135 ~ 21078870 (+)
G129913 NA other downstream 492738 21271384 ~ 21276879 (+)
AMCG00001260 NA other downstream 1192653 21971299 ~ 21992332 (+)

Expression


Co-expression Network