AMCG00001239


Basic Information

Item Value
gene id AMCG00001239
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20858612 ~ 20871643 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001239
ATGGCGAGCGACGATAGAGTGGCCATTTTGACGGAGGACGAGGAAGAGCAGAAGAGGAAGTATGTGCTGGCCGAGCCCTTCAACACCCTGTCTTTGGATCAAGTGGCCGGGCCCCCTCCCGTGCCGCCACCCCCTCTGGAAACCCCTCTGCCTGCAGAGGAGGACGACATCGACTGCCTGGAAAGGAACTGCATAAAGATTGACGACCATCTCCTCATTTCCAAagtcttttatttcttcttctacGCCGCCTACGGATCCTTGCACCCTCTGCTGCCTGTCTATTACAAACAGCTGGGCATGACACCCAGTCAGAGTGGTCTTCTCGTCGGCATCCGCTACTTCATCGAGTTCTGCAGTGCTCCGTTTTGGGGGGTGGTGGCCGACCGCTTCAAGAAAGGCAAAATCGTCCTCCTGTTCTCCGTGCTCTGTTGGGTTCTGTTCAACTGCGGGATCGGTTTTGTGAGGCCGGCCTCCATGACGTGCGTCCTGAAGCACCCGACCGTAACGCCGACCAACACCACGATTACCCCGACCTCCCACTCCACCTTGAACGACACCAAGACTCGGTACAGGAGAGCTTTGTACAGTGGGATCTTCACTCTGCCCTTTTTTGACTTGGAACACCTTTTACACTCCCGGCATGCCAGAAACGCTGACGTAAACAGGACAGTGGAGCTGTTAGCTGGAGAGAATGGTACCACACCGGCATCACCCACAACCATCCCCACACCCAGTACCACCACCAGCATGACCACTCAAAGCACAACCAAGTCCTTGGACAAGTACACAATCACTTACAACAGTGACCAAGTGGAgaccatcttcctcttgatcttGTTGGTGATCATAATCGGGGAGTTCTTTAGTGCCCCCGCCGTGACCATTGTGGACACTGTGACCCTGCAGTACCTCGGCAAACACCGGGACCGCTACGGCCTGCAGAGGATGTGGGGCTCTCTGGGCTGGGGGTTGGCTATGCTCTCGGTGGGCATCGGCATCGACCACACGCACATCAGGCTCTTCATCGAGGGCACCGGCTGCGTCCTCCCCGATTACAAGAACTACCAGATTGCCTTCATTGTGTTTGGGGTCCTGATGACGCTGGCGCTGATTGTGGCCACGCAGTTCTCTTTCAGCAGCAGCATTTACAAACCTGAGGAAGACCAGAAGGAGGAAATAGAAATCCCCCAGGTGGCCCGCAACACTCCCACCGAAGGAAGTCTCGAAGCCGCCCCTCCGGCTACCCCCAGCACCAGCCAGGACCAGTTTCAATACAAAGAGCTGATCGTGCTGCTCTGCAGTGTGCGCTACGGCACGGTCCTCTTCGTGGCTTGGTTCATGGGCTTCGGCTATGGCTTCGTTTTCACCTTCCTGTACTGGCACTTAGAGGACCTGAAGGGGACCACCACGCTGTTCGGCATCTGCTCCGTGCTGAGCCACGTCTCCGAGCTGGCGGCCTACTTCACCAGCCACAAGCTCATTGAGTTGGTGGGACACATCAGGGTTTTGTATATTGGTTTGGCCTGCAACACAGCCCGCTATCTCTACATATCCTACTTAGAAAATGCTTGGATTGTCCTGCCTATGGAGGTACTTCAAGGTATCACTCACGCCTCTGTGTGGGCAGCCTGCATCTCGTATCTGAGCGCTGCCGTGCCCCCAGCACTGAGGACCTCTGCCCAGGGCATCCTGCAGGGCCTTCACCTAGGCCTGGGCAGGGGCTGCGGAGCCATGGTCGGGGGAGTCTTCGTCAATTTCTTCGgGGCGGCTGAGACCTTCAGAGGAATAGGAATGGCTTCTCTTGTGATCTTATTAGTGTTCGCTTTCATTCAGTGGGTGGTAgggaaaaatgaagaaaaagAGGACAGGATGCTGGCGGAAAACATCCCCGTACCATCCAGTCCAGTTCCCATCGCCACCATCGACCTGGTGGAGCACCAGTCTGAAGCCGTGATGCCTCGCATGGAGCCCAAGCTGCCGCCCAAGAAGACCAAACACCAGGAGGAACAAGAGGACGTCAACAAGCCGGCCTGGGTCATCTCCTCCTCGCCCTGGGTGACCATAGCCTTTGCCTTCTACCAGATCAAAGAGATGGTGAAAATGGCCCGGCAGAGCCCTGCTGTGGAGAATCAGCCTCTTCAGGAGACGAATGAACCTGTCGTACCAGCCCCTCCAACCGTGCCAACGTCCGACAGGCACACAGCAGACCAGCCTGCGGGGGCGGAGGAGCTGGCATCCCCCGAAGCTCCTCCCAGCACCCCCGCCAGTGACCCCCCAGCAGAAGTGAACCCGGCCCCGGACAACCAGGCCCATCCGCCCCCGGACCCCCCAGACAGCGTGGAGCACCCCACTCCTTTGCCAGGCAGCTTTGACTCTGCGCCACCCTTGTCTTCGACGAACCCTTTCCGCCAGCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001239 True 2421 mRNA 0.57 6 20858612 20871643

Neighbor

gene id symbol gene type direction distance location
AMCG00001238 NA coding upstream 2268 20847770 ~ 20856344 (+)
AMCG00001240 NA coding upstream 14385 20843118 ~ 20844227 (+)
AMCG00001235 NA coding upstream 79966 20749802 ~ 20778646 (+)
AMCG00001237 ahr1b,LOC107600975,LOC107586968,LOC107751479,LOC107687868,LOC107653601 coding upstream 144130 20708287 ~ 20714482 (+)
AMCG00001234 NA coding upstream 159012 20687490 ~ 20699600 (+)
AMCG00001243 gls,LOC105022419,LOC102789803 coding downstream 97073 20968716 ~ 20995462 (+)
AMCG00001248 NA coding downstream 243632 21115275 ~ 21118948 (+)
AMCG00001250 LOC105905614 coding downstream 309994 21181637 ~ 21203572 (+)
AMCG00001249 abcb6a,abcb6 coding downstream 352962 21224605 ~ 21226842 (+)
AMCG00001252 cnppd1 coding downstream 432630 21304273 ~ 21315646 (+)
G129756 NA non-coding upstream 261860 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 552755 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 763545 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 1076750 19781647 ~ 19781862 (+)
G129695 NA non-coding upstream 1077005 19781250 ~ 19781607 (+)
G129904 NA non-coding downstream 369694 21241337 ~ 21241568 (+)
G129961 NA non-coding downstream 537291 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 584376 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 669820 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 679787 21551430 ~ 21554095 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 181755 20611272 ~ 20676857 (+)
AMCG00001229 NA other upstream 362244 20464363 ~ 20496368 (+)
AMCG00001223 s100b,LOC106574292 other upstream 1366268 19478260 ~ 19492344 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 1716467 19043304 ~ 19142145 (+)
AMCG00001203 NA other upstream 1968888 18888284 ~ 18889724 (+)
AMCG00001241 NA other downstream 34728 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 70429 20942072 ~ 20942397 (+)
G129877 NA other downstream 205492 21077135 ~ 21078870 (+)
G129913 NA other downstream 399741 21271384 ~ 21276879 (+)
AMCG00001260 NA other downstream 1099656 21971299 ~ 21992332 (+)

Expression


Co-expression Network