AMCG00001253 (ttll4,LOC102787029)


Basic Information

Item Value
gene id AMCG00001253
gene name ttll4,LOC102787029
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21319470 ~ 21340288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001253
GACGCTGGAGGAAGTGGCGGTGCGGCGGCGCGGCGTGGTTGCTAGGAAGCGGGGCAGGATCGGGACTGTGGGGCCTGTATTGCGGGAGCTCGGGTGGAGGCGCTTACCTTGCACACCGGTTGACACCCTGCTGAGGTGTCCTTGCTCCTAGGTGCTTGATGTGGCCATGGATGATGGTATTGGCATGCTGTGAGATGGCTACACATGGCCTCCAATGGAGCTGAAGATGTGAAACGGGCATCACCGTCTGCTGGCACAGTCAAAGCAGGTCCTGCTGGGGTCAGACTGCCCACCCACTCCACCTCTCACCCCTTGGAGAGGAGGCTTCACAAGTCCTCGCAGCCTCGGCCTCACCTGCCCTTTTATCCCGGGACTCCGAGCAATGTAAGAGTGCTCCAGGACCGGCTCTATTTCATCTCAGGGATTGCTCCACACCGTGCCTACCTAGCCGTGCCCACAGTCGGTACCGCAGGAGCTGGTGGGGCTGTAGTAACCAGGATCCCAACGCGGTCTGGAGTCCCGTTGCTCCCTTTCAACAGCCCATGCCGCTTTGAGCAGACCATCCAGAGCTACAGGCCTTACTGGCGCTTGGAGTCGCTCAAGTTCAAGTCTGGGATATTGGGGAAGAGAGCCTTTTCTTCTCACCAAACCACCCTGTACCCCACTTGCCCTTCCCCGCAGAAGGCTCCTTCTGATAAGCTATTGACCACAGTTGAAAGTGCCATGCCAACAAACCAGCCTTCTGCTTGGACTAGCCAGCCTAGGATTAACAACAATGCATTTATGAAGCCTACCAGCGCCAAAGTGCCTTCTTACCCCAGGCGTGAGTCTAGCAATAAAGGGATGCCTTCTGCCACGTATACCTTGTCCGCTTCCTATTATTACGGGGAACAGGGCGACTGTAATTTGGAAACCACATCTGCAAAGGGTACCAACTCCGTGCCTTCACTCAGCTGCAGTATGCCCTTCCCTGAGGAATCCCTGGGAGATAACCCGGAGAAGAGTCTGAACGTGATACTGGAGGAAGTCTGGAGGGTACCACATTCACAATCCCTGGCTCCTGGAGTTTGTTCCGAGAGGACTACTACAGAATGGGGTAAGGCCAGGAACGGTCACACTCACGTCAGGCTTACGGAAGCTGTCCGAAAGTTGACTGGGAATGCTTGTCAGCTGAAGAACGGGGTGGTGAACGGTGTGGTCAGGCAGCCAGTGTCAAACGGTGGCCCTCTAGCTTCCCAGTGTCTTCAGAATGGCTCCGGTGATGCCAAGATGCAGCAGGCAGCTAAACCTTCACGTCCCTCTCTACAGGGAGACCCCGGCGTTGAGTTGCCAGCCAAAGCCTCAAAGTTTTGCCTTATGAAAGGAGACATGGACTGCAGTTGGGCACCCATGACTGTGCTAGACAGCCTGACAAAGAGGGAAAGCCCCATGGCTTGCTGTAGCCCATCTTGTATCGAAGCCACCCAGGGCCTTGACAGTGCCATGTCTCCTCAGGGGGAATCTGCGGAGACCTCATCCTCTCAGGTCGCATCCGTTTATTCGGTAACGTCACGGATCTCTGCCATACATCTGAGCAAGGAAGCCAGACCACTTGCAAAGCAGGATGATGCCTGTGCCATTGAGATGAAAGACCTGGATCCTGAAGATGAAGCCATGCAGCAAGGTgtggatgaggaggaggaggaggaggaagagctaACGGAGGATCTGGACAATGAATGTAGTGtggatgaagatgatgatgatgaGAGATCAGATTGCTCCTCAATGAATGACACGTCCTCAACTGCTTCTATGGTCCTTATATCAAGGAGCTGTACTGAGGAGTCAGTCATGACCCTGTCAGATAACAAGGTTTTGAAGCCTGCACTGGTGCCAAGTTTATTCCCCAATGTGCCTCCCACACTGTACTTTAGTACACCCGATGAAACAGTGGAGCCGCTGCCGGCGGAGCAGAGGAAGCTCTTGAAATGGAAGATGAGCACGGTGACCCCCAACGTGGTGAAGCATACCATTGCCAGGTCTCACTTCAAAGTCACCAAGAAAAACCATGACTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCCGGGGTTCAAGGCGATCAGAGAATACCAGAAGTTGAATCACTTCCCAGGGTCCTTCCAGATTGGTCGAAAAGACCGGTTGTGGAGAAACCTGTCGAAAATGCAGGCACGCTTTGGAAAGAGGGAGTTTAATTTCTTCCCCCAGTCCTTTGTGCTTCCGCAAGATATTAAGCTACTGAAGAAAGCCTGGGAGGAATGTGGAAGCAAGCAGAAATGGATCATAAAACCACCCGCATCAGCCAGAGGGATCGGGATCCAGGTTATTCACAAATGGAGCCAGCTGCCAAGGAGACGGCCTCTGTTGGTACAGAAATATCTTCATAAACCCTACCTCATCAGTGGAAGCAAGTTTGACTTAAGGATATACGTGTATGTCACATCCTACGATCCACTCAGAGTCTACATGTTTACAGATGGTTTGGTGCGGTTTGCAAGTTGCAAGTACTCCTCTTCTATGAAAAGCCTGAGCAACAAGTTTATGCACATAACAAACTACAGCgtgaacaaaaacaattctgCATACCAGCCCAACAGTGACGATAAAGCCTGTCAGGGTCACAAGTGGGCTTTGAAAGCACTGTGGCAGTATCTGAATGCTAAAGGAGTCGACACTACTTTGATCTGGGAGAAGATCAAGGACATTGTGATCAAAACTATCATTGCATCTGACCCGTATGTGAACAGCCTGGTGAAGATGCATGTGCGATGCCCGTACAGCTGCCATGAACTTTTTGGCTTCGACATCATGCTGGACGAGAACTTGAAGCCTTGGGTGCTGGAGGTCAACATCTCACCAAGCCTCCACTCGAACTCCCCGCTCGATGTGAATGTCAAGGGTCAGATGATCCGGGACCTCTTCAACTTGGCCGGATTCGTTCTACCTCAGAAAGACGACGTGACGCCGGCAGGAAGTGCCAGTGGCTCGACAAGCAGCTTGTCTGCATTTGTGAAAGCCAAGAGTAAGCTTGCCACAGAGCTGTCTTCCGATGAAAAAGTGAAGAGAGCTTATTTTCTGAGTCAAAGATTTGCGGATCAGGAGTTTTTCTCTTCtgtcctggacttgctgactcCAGACGATGTGAGGGTCCTGGTGGAGATGGAGGACGAATTCTGCCGAAAGGGGGAGTTTGAGCGCGTCTTTCCCTCCCCTAGCTCCTCGCGTTATCTGCGCTTCTTCGAGCAGCCGCGATACCTCAACTTGCTTCTCAACCAGTGGGAGCAGAAGTACTACTTGAACAGGCAGAAAGGTGTCAACCTGCTGAAGAGTCTTTGTCAGAAAGGTGTCCATATGGGAAACAACCTTGATCCAGCGCATATGTGGTCCTCCAAATCCAGCGCCGTCCAGAAGCTTGAACCGCACAGTATTCTCACACCCACACAGGAGCACCTCAGAGCCGGGACCGCAGTCAGTGACCGGAAGAAGGCGCCCAATCCTGATGAGACGACGGACATCAAGCTGATGCCTTGCAGCCGGAGTCTGCCTCTGCTCGCCAGCCTGGGGACAGCTGATTCACAGACCTCCCAGAGTCTGCACAATGGAGACCTTGTTTGACGCTGATCTGGACATGCTTTCTCCACTCCCGGCGGTGTTTACACCTCCTGCCTCCGCAACGGCACAGACCTCTGGGCATGCGCTGTTGAAAGAGGCAGTCATTCCTTCTTTTCTCCTTCTTCCCCTCTTTGTTCCACTAAAAGCAAACTGATCGGTTGCCCTTCTGATTTGGAGGTTGTTACAGAAATCACTGGACAAattgaagtgtttatttatttaagagctTATTTATAGTAGGTGTGTCAATTTCTAGTATGGCTGGCTTTTTGGGACATCTTTGTTTCCCATCAGCACCCATTCCGAGTGGTTTGATTCCTTCGCCAACCTTCCTCAGATTCTGACCAGGTAAACAAACAATTTGTCTTTTAAagttttgtattaacatttgGTTGACTGTTAGTAAGGGAACCAAAGTAAGTTAGGGGAGGTTGCTTCAGAAATGCCCCCTTCGGGTgtatttggaataaaaaaaaataaaaaaaaattaagagaagaTTTGTggattatttcattataataagaattaaaaatcTATAGAACTTGAAAATCTTTTGATATTGTCCCAGGTAAGCTTTCCAATTGTGAAGGTCCAG

Function

symbol description
ttll4 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Is expressed in alar plate midbrain region; immature eye; lens; optic tectum; and optic vesicle. Orthologous to human TTLL4 (tubulin tyrosine ligase like 4).

NR:

description
PREDICTED: tubulin polyglutamylase TTLL4

GO: NA

KEGG:

id description
K16601 TTLL4; tubulin polyglutamylase TTLL4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001253 True 4232 mRNA 0.51 19 21319470 21340288

Neighbor

gene id symbol gene type direction distance location
AMCG00001252 cnppd1 coding upstream 3824 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 92628 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 115898 21181637 ~ 21203572 (+)
AMCG00001248 NA coding upstream 200522 21115275 ~ 21118948 (+)
AMCG00001243 gls,LOC105022419,LOC102789803 coding upstream 324008 20968716 ~ 20995462 (+)
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding downstream 3579 21343867 ~ 21353441 (+)
AMCG00001259 NA coding downstream 711582 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 820103 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 962242 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 1044432 22384720 ~ 22450890 (+)
G129904 NA non-coding upstream 77902 21241337 ~ 21241568 (+)
G129756 NA non-coding upstream 722718 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 1013613 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 1224403 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 1537608 19781647 ~ 19781862 (+)
G129961 NA non-coding downstream 68646 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 115731 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 201175 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 211142 21551430 ~ 21554095 (+)
G129989 NA non-coding downstream 267552 21607840 ~ 21608250 (+)
G129913 NA other upstream 42591 21271384 ~ 21276879 (+)
G129877 NA other upstream 240600 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 377073 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 394230 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 642613 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 631011 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 849620 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 1159747 22500035 ~ 22530836 (+)
G130335 NA other downstream 1825975 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 2224863 23565151 ~ 23685121 (+)

Expression


Co-expression Network