AMCG00001254 (LOC108266105,LOC107596559,LOC107738101,LOC107752899)


Basic Information

Item Value
gene id AMCG00001254
gene name LOC108266105,LOC107596559,LOC107738101,LOC107752899
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21343867 ~ 21353441 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001254
CGGCTCCCAATTTAGACAACAGAGGAGGGCTCCTGGAGGGAGCAAAGTAGGAGTATGTTCACGGGCCGACTGCTAGCAGATTTGGATCTGTAAAGCTCCATGGAACAAACTGGCATGGATGTGGACCCCCCCTCTCAGGTCCCCTGTGTTGACTATGACCTAGTGATGAAAAATAAAGCAGCTCTGGAGCCTGATACAGATGTCTACACAAAATTTATGATGAACCACTGCTGCTATGATGCCATTCCAACCAGTTCCAAATTGGTAATTTTTGACACCACTTTGCAGGTGAATAAGGCCTTCTTTGCTCTGGTGGCCAATGGCGTGAGGGCAGCTCCTCTGTGGGACAATAAGATGCAGTGTTTCGTAGGGATGCTGACAATCACTGACTTCATCAACATCCTACACAGATACTACAAATCCCCCTTGGTACAGATTTATGAACTGGAAGAACATAAAATTGAAACTTGGAGAGAAGTTTACTTACAGTATTCATTAAATTCACTGATCAGCATCACACCTGATTCCAGCTTGTTTGATGCCATATATTCCCTGCTGAAGAACAAGATTCATCGATTGCCTGTGATTGACCCTGAGTCCGGGAATGTTCTTCACATCCTGACACACAAACGCATCCTCAAGTTCCTCCATATTTTTGGCTCCATGATCCCAAAGCCCCGCTTTTTGCAGAAGACAATTCAGGAAGTGGCGATTGGGACATTCAAGCAGATAGCGACTGTGCATGAGGACGCCACGGTCTACGAAGCGCTGTCAACCTTCGTGGACAGACGAGTGTCTGCCCTCCCAATCGTGAATGGAGAAGgCAAAGTGGTAGGACTCTACTCCAGGTTTGATGTGATTAATCTGGCCGCTCAGAAGACCTACAACAACCTGGACATGACGGTGAGAGAGGCCCTGCAGACCCGGGCGCACTGCTTCGAGGGCGTGCTGAAGTGCTACCTGCACGAGACTCTGGAAGTCATCATTGACCGCATTGCCAAGGCAGAGGTGCACCGCCTGGTACTTGTGGATGACCGCGACGTGGTCCGAGGAATTGTGTCCCTCTCCGACCTGCTCCAGGCTCTGGTCCTGACTCCTGCAGGTATAGACGCCCTTTTCTCTTAACTCCTTGCGGGGTTGATCATCCATCCTCAGCTAACAGCATTTCCCATACAAGACACTGCTAGCACGTCTGTCTCTAACTGTTGATGGGATACGGCAGAAGGAAGaagatattttcctttttatttcttctcccCCCTCCAAAAATGGACTACATCTCCTTTACAAGACTTTGAGTTAGCTGTAGTCTCATCTTCATCTAATTTTGGACTGactttctgttattattattattattattattattaatattattattattattattattatttcattcacTTGTACAGGATATTGTCTTTTGAATAATGAATGGGATACCAGTGTAACAAGCGAAGATCATGCCTCGTTTAACTTGCAGAGATAAATACTGGTGGATCTGTGATCGACAGATAGGATTGCTCTGTGGCAACATAGCACTGGATGAATGCCTCTAGAGACGAGTGTTAAAAGTTTTTTGGCGTGTCAGCTTGACAGGATAAAGAGGGATTGAGGCTGTGAATGACAGGGCTTTACAATTAAAGCATGAGCTGCTGAGTGACTTGTGTACAttgctgaaaacaaaatctgttctAAGATTCAATATGTTACACTGTCACGCTGGttggagttttgtttttaaatatcatcTTTCATAACATTCAGATaatttttcttaattgtatctatattttatacatCATTGCCTTTCTTAGGTATGGCATATCATATGAGTAGCagtggaaggttgtgggttaaATCCTGGTGGGGTACCCCTTACCTCAAATGCTCTactaataatacacataatacttataaatgggtaaatgtatgtaatcaaaatatacacattgtaCCAatcgctctggataagggtgtctgccaaaatttatataatactataatataataatcaggGTGGGTCTCTGCTGGTTATTAGATGATGACAGAGGGAAAAAGAAGCTTCCAATGTTGGTGTTATTTTCACTAATTCAACTCTAAACATTTGTTCAAATTGTCTGTGCATGTTGACAAACCgattctgtgatttatttattttgtgcttggtgttgtgccaaacacaaacacatggtcaatttgcttattttactAGGACAGGGCTTGAAAGATATGGACTTTAATGATCCCTACTTCTGACAGTTACACACCTACTGTGAATTACAGCTGGTTACGAGTGAACAGTTCTATGTTGAACTTCTATGTTCTATGAACTTCAATCCCTGAGGGTAGCTGAAGAATCTGTGGT

Function

NR:

description
PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1-like isoform X3

GO: NA

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001254 True 2368 mRNA 0.42 13 21343867 21353441

Neighbor

gene id symbol gene type direction distance location
AMCG00001253 ttll4,LOC102787029 coding upstream 3579 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 28221 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 117025 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 140295 21181637 ~ 21203572 (+)
AMCG00001248 NA coding upstream 224919 21115275 ~ 21118948 (+)
AMCG00001259 NA coding downstream 698429 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 806950 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 949089 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 1031279 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 1186909 22540350 ~ 22542253 (+)
G129904 NA non-coding upstream 102299 21241337 ~ 21241568 (+)
G129756 NA non-coding upstream 747115 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 1038010 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 1248800 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 1562005 19781647 ~ 19781862 (+)
G129961 NA non-coding downstream 55493 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 102578 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 188022 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 197989 21551430 ~ 21554095 (+)
G129989 NA non-coding downstream 254399 21607840 ~ 21608250 (+)
G129913 NA other upstream 66988 21271384 ~ 21276879 (+)
G129877 NA other upstream 264997 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 401470 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 418627 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 667010 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 617858 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 836467 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 1146594 22500035 ~ 22530836 (+)
G130335 NA other downstream 1812822 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 2211710 23565151 ~ 23685121 (+)

Expression


Co-expression Network