AMCG00001260


Basic Information

Item Value
gene id AMCG00001260
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21971299 ~ 21992332 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001260
CAGAGACCCCCGGCACCCTTTTGGGATAGACGCCGCCTCCCCTCTGTAAATAAGCGCAAAACATCTTCTGCCAAATTAAAGCTCCTTGTCGCGGTGCAGGTGCATGCTCTCTACGGAGTCAACGTGtgtagatatatacatatagatgtgtatgtgtttattcatctatttataattaattcatataaaCAGTCTATTTCCACGCTGCTGCTGCCGATCTGCGTTGCCATGTTGTGGCATTGAGTGCTTTTTCTCTATTGCATCTGGGTTTCTGGACCAATCTCTCTGTAGCTAGATGGGGTTGAATAACCTGTTATATGCTTTCTGCTGCTGTCGGTGCTACGCttcagaaaagggaaaagaaaaggaaccaTTAAGTGGCAGCGAGTATGGGTCAGACCACGCCAGTCTGAAAGATGAGGCCAGGGACCTCTGGAGCCCCCCACAGGACTCCCCTCCCATGGAGTCCAACGATGACAAAGAGCTCCACACCCTCCTCATGATGAGGAGCCAGGTGGACAAGGACACAGAGGAGTGGGAGAAACTAAACTATGATATTCACACCTTGAGGTACACCAGGAGAGAAGTGATGGCCAGGTGGAAAAAAATACTACTGCAGTTAGgaTTTCAGAAGGAAGTGGATTCCTTACTCTCTGTTAATAAGCAAAGCATCTTGAGTGAATCGGGGAACCTCACGAAAGCAAGGGAGCTGCTGCTGAAACTGACGGAGGAGACGAGTGTCTTTCCAAATGGCTGTGGAGCGCAGGAACAATATGTCGTTGTTATGGCCGTGAAAATGGCCGCCACACTGGAAGtccagaagaaaagaaagaggaaaaagataCCTGCTCCAGTCCCGGCCGCACacgccgccgaaccagaggtcccgaccCCGGCCGCGCctgccgccgaaccagaggtccagATCCCTGTCCCGAACCCGGCCGCCGCCGCTCAAACAGAGGTCCCGATCCAGATCCCGATCCCGGtcgccgccgaaccagaggtccagATCCCGGTCCCGAACCCGGCagccgccgccgaaccagaggtccagATCCCGGTCCCGAACCCGGCCCCCTCCgtcgaaccagaggtcccgatcccggccgccgccgtcgaaccagaggtcccgatccagGTCCCGATCCAGGTACCGATCCCGCCCGCCGCTgtcgaaccagaggtcccgatccaggtcccgatcccggccgccgccgtcgaaccagaggtcccgatccagGTCCCGATCACGGCCGTCGCCgtcgaaccagaggtcccgatccagGTCCCAAACCTggccgccgccgccgaaccagaggtcccgatccagGTCTCGAacccggccgccgccgccgccgccgcacCAGAGATCCCGATCCAGAAATCAAATGTTAACATTTCCAAGATAAGACGTTTgctaatctcagccaaaatgcGGGCCCCATATTTTACAAGCATTCCCCTGAGACTGGAGATGTTTGTAGATGTGAAGGACAAGGTCACCCTAGGTCAACAACAGCTGGAGAATGCCAGCGTCTTAGGGCAATGA
>TU163009
CAGCACTCTGTTTGAATACAGgaTTTCAGAAGGAAGTGGATTCCTTACTCTCTGTTAATAAGCAAAGCATCTTGAGTGAATCGGGGAACCTCACGAAAGCAAGGGAGCTGCTGCTGAAACTGACGGAGGAGACGAGTGTCTTTCCAAATGGCTGTGGAGCGCAGGAACAATATGTCGTTGTTATGGATCGGCTTGTGTCACTTGACAGCGCTGAAGAATTTCTTaaaattgcaaagaaaaaatatcctAAGAAGTGAGATGGAGATTAGTAACTCCAGCACCAGGGTCCTCCACAATTCAAAGTTGCCACGTTGGCTGGGATatgggacagggagagggaggggggagactTTCTTCAGATCATTCAGGCTTTTGAAACGCAGTGTTATGGATAAAGAACATTCCTCATCGATCACacttttcctttaaattgtGTTGGATTGTTGTATCACCATCACCAGCAAACATACAATTACTGGATTTCAGggaattgatttttattttctttaatttacacCTTTACAGATTACTATACAGACAGATATTTTAAAcgtttgttatttatgtttgttttaaccaCCACGTATAACAACCATTTCTTACAAAccaatttttttgtaatatccACATATGATGTATATTGTATCGAAGTTCTAAGTAAATTGGacactgttttaatttttcttgttCAATGCTACAAATAAACTCTAATTCCAATGCTTCACAAAGTTGTGTGATG

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0005520 insulin-like growth factor binding molecular_function
GO:0019838 growth factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001260 True 1552 mRNA 0.56 6 21971299 21992332
TU163009 False 739 lncRNA 0.38 3 21978053 21979797

Neighbor

gene id symbol gene type direction distance location
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 617858 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 631011 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 655653 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 744457 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 767727 21181637 ~ 21203572 (+)
AMCG00001259 NA coding downstream 59538 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 168059 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 310198 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 392388 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 548018 22540350 ~ 22542253 (+)
G130014 NA non-coding upstream 20496 21910033 ~ 21950803 (+)
G130010 LOC107575789,LOC100846954 non-coding upstream 104674 21826245 ~ 21866625 (+)
G130008 NA non-coding upstream 146701 21824258 ~ 21824598 (+)
G130002 NA non-coding upstream 148405 21821725 ~ 21822894 (+)
G129998 NA non-coding upstream 260385 21710325 ~ 21710914 (+)
G130090 NA non-coding downstream 209698 22202030 ~ 22205125 (+)
G130125 NA non-coding downstream 334308 22326640 ~ 22326878 (+)
G130152 NA non-coding downstream 589984 22582316 ~ 22582621 (+)
G130153 NA non-coding downstream 590366 22582698 ~ 22582964 (+)
G130144 NA non-coding downstream 622952 22615284 ~ 22616157 (+)
G129913 NA other upstream 694420 21271384 ~ 21276879 (+)
G129877 NA other upstream 892429 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 1028902 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 1046059 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 1294442 20611272 ~ 20676857 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 197576 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 507703 22500035 ~ 22530836 (+)
G130335 NA other downstream 1173931 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1572819 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 2432233 24424565 ~ 24446233 (+)

Expression


Co-expression Network