AMCG00001278 (ercc3,LOC107706662)


Basic Information

Item Value
gene id AMCG00001278
gene name ercc3,LOC107706662
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22500035 ~ 22530836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001278
atggcaGATGAGCAGGAAGTTTTGAACTCAATCATGCAGGACCTGGCTGAGCTACACAGGGCCAGCCGCCCTGCCATTGCTCTCTCTGACTTGGGGAAGCCCAAGGCCTCGTCTCCCAAGAATCAGaagCGTATTCATGATGAAGAGGATGAGGAAGATGAGACCGCGGGCAGTGAGTCCCAGGAGGCCATCCCAGCTGCAGCAGGGAAACAAGTTGATGATGTTGGGGTCAAGACAGATGAATATGGAGCCAAGGATTACAGGCTGCAGATGCTCTTGAAAAAGGACCACACATCCAGGCCTATTTGGGTGGCTCCTGATGGACATATTTTCCTGGAGGCCTTCTCTCCAGTGTACAAATACGCCCAGGACTTTCTGGTTGCGATCGCCGAGCCGGTCTGTCGACCCATCCACATTCATGAATATAAGCTGACGGCCTACTCCCTGTACGCTGCCGTGAGTGTTGGGCTGCAGACGACTGACATCATTGAGTACCTGCAGAAACTGAGCAAAACGTCTGTTCCAGACGGCATCATACAGTTCATCAAGGTGAGGCCGTGA
>TU163149
ATTCTGCATTcaataatttattgtatttcagagAACATACCAAAGCATATTATACAGTGTATCATGGCACACATGATCAGGGCTGTGTAATCTTCTGATTCTGAACTggttgtcatgttttgtttttttcatggcaGATGAGCAGGAAGTTTTGAACTCAATCATGCAGGACCTGGCTGAGCTACACAGGGCCAGCCGCCCTGCCATTGCTCTCTCTGACTTGGGGAAGCCCAAGGCCTCGTCTCCCAAGAATCAGaatGATGTCCGAGTGAAGTTTGAATATAGAGGTGAAAAGAG

Function

symbol description
ercc3 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in apoptotic process and nucleic acid metabolic process. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in nucleus. Predicted to be part of nucleotide-excision repair factor 3 complex; transcription factor TFIIH holo complex; and transcription preinitiation complex. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; photosensitive trichothiodystrophy 2; trichothiodystrophy; xeroderma pigmentosum; and xeroderma pigmentosum group B. Orthologous to human ERCC3 (ERCC excision repair 3, TFIIH core complex helicase subunit).

NR:

description
TFIIH basal transcription factor complex helicase XPB subunit

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001278 True 561 mRNA 0.53 3 22500165 22530836
TU163149 False 297 lncRNA 0.43 2 22500035 22500792

Neighbor

gene id symbol gene type direction distance location
AMCG00001272 NA coding upstream 49145 22384720 ~ 22450890 (+)
AMCG00001271 NA coding upstream 178862 22302530 ~ 22321173 (+)
AMCG00001265 NA coding upstream 330985 22160391 ~ 22169050 (+)
AMCG00001259 NA coding upstream 416794 22051870 ~ 22083241 (+)
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 1146594 21343867 ~ 21353441 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 9514 22540350 ~ 22542253 (+)
AMCG00001275 ercc3,LOC107706662 coding downstream 20304 22551140 ~ 22565620 (+)
AMCG00001276 NA coding downstream 53191 22584027 ~ 22607255 (+)
AMCG00001279 NA coding downstream 115277 22646113 ~ 22752856 (+)
AMCG00001284 NA coding downstream 500468 23031304 ~ 23033499 (+)
G130125 NA non-coding upstream 173157 22326640 ~ 22326878 (+)
G130090 NA non-coding upstream 294910 22202030 ~ 22205125 (+)
G130014 NA non-coding upstream 549232 21910033 ~ 21950803 (+)
G130010 LOC107575789,LOC100846954 non-coding upstream 633410 21826245 ~ 21866625 (+)
G130008 NA non-coding upstream 675437 21824258 ~ 21824598 (+)
G130152 NA non-coding downstream 51480 22582316 ~ 22582621 (+)
G130153 NA non-coding downstream 51862 22582698 ~ 22582964 (+)
G130144 NA non-coding downstream 84448 22615284 ~ 22616157 (+)
G130160 NA non-coding downstream 94122 22624958 ~ 22625203 (+)
G130166 NA non-coding downstream 268261 22799097 ~ 22805058 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 261381 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 507703 21971299 ~ 21992332 (+)
G129913 NA other upstream 1223156 21271384 ~ 21276879 (+)
G129877 NA other upstream 1421165 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 1557638 20942072 ~ 20942397 (+)
G130335 NA other downstream 635427 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1034315 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 1893729 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 1902957 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 2053343 24584179 ~ 24606472 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_03708794_03723637 ERCC3 coding CI01000024 null 3708556 ~ 3723731 (+)