AMCG00001279


Basic Information

Item Value
gene id AMCG00001279
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22646113 ~ 22752856 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001279
aTGACTCTCGTGGTGCTGTCCAGTGCTGAAACAGTGCTGCTGTATTGCCAGGCAACATGCATCTTCCGGGtaTTGAAGGAGCATATGTTAGTCCACCTAGTACTGCAGAAACTGGGAAAGGCTGACGAGACAAAGGATGAACTCTTTGAAGAGAGTGTGGTGAATTTCAACAAGCAGCTGGACACTGATCTCTTATGGACAGATTTCCATCAGAAACTCGTGGACCATGCGCTCATCTCCATGGATACCTATCTCGGACAGTTCCCAGACATCAAGGTAGGGAGTACAACAGGGAGGAAAGGAGGGAAGTTGGAAATAaggaacctgaacctgaacctgaacctgaacctgaacctgaacctgaacctgaacggGCCAAAGACCAAGAGCCTTCCTTCttcctatttTAAGCCTTTCAGAGGTCCGGAGCTAGTTAAGGCCGACGCCCAGCAAGAGACCCGTATTGCTAAGCGAGGTCGGAAGTTAGTAGACTTCGACAGCGCCAGACACCATTTTGCAGCCCTGCAGCACGCAAAGAAGAAGGATGATGTGAAGATTGCCAAGGCAGAAGAGGATCTGGGGAAAGCCCAGAAGGTGTTTGAGGAGATCAATTTGGATCTCCAGGAAGAGTTACCGTCTTTGTGGAATAGTCGTGTTGGCTTCTATGTTAACACATTCCAGAGCGTGGCCGGTTTGGAAGAGAAATTCCACAGAGAGATGGGCAAATTTGAGGCCCCTGGGCCTATGCAGGATGAAGCCAGCCTGCTTGATTTGGATTTTGATCCACTCAAACCAGCGGTCACCCCAGGGGGCACAGCCACCTCCCCTGCCTCGCAGCCTGAGCAGACCCCATCACCCGCCCCTCCCGATCAGGGATGCTCAGATGCTGGGGAGGAGCGCTGGGATGAGGGGGCTGCAGAGCCCCAATGTGACGAAGTTAAAGATGAGGCCCAATGGGATGAGAGTGCCACTGAGCCCCTGTGGGATGACACTTCTTCCCAAGCACAGTGGGGTGACCAAGCTACCCAGCCCCAGTGGGATGACAATTCTTCCCAGGCACAGTGGGGTGACCAAGCTAACCAGCCCCAGTGGGATGACAATTCTTCCCAGGCACAGTGGGGTGACCAAGCTACTCAGCCCCAGTGGGATGATGCTGCGGCCCAGCAGCAGTGGGACAATAGCGCCGCCATAGACGTTACCACTGCTGCTGATTCTGCTGCTGACAGTGAGCTTCAGAACaaTTCTCTTCCTGCTGTGGTGGCAGAGACTTTGCCAGGAACAACCAATGGAGCTCCCACCAATCATAGCGTGTCATCAGAGGGGGCAGAAATGCCTCCTGGATTTCTGTTTAAGGTTCAAGCTATGCATGATTACACAACCAATGATGCAGATGAACTGGAGTTGAAAGCCCGGGATGTGGTGTTAGTGATTGTCTTTGAGAATCAAGAGGAGCAGCATGTGGTGATCCAGTCTTCTTTGCTGGTCCTTGTCCACGGTCTGCTCCAGCAGCAACTCCAGGATGGGAATAGAGTCCGAGGCCACTCCAGCTACCAATTCATGGCCACTAGCCTGTTCAGCTCTGGCATTTCCACTCTTCTCCAGACCACACTGGGAACCAGGTTGCCCCTAATCCAGGCCCCATCCATGGAGTTCCTGATTCCTGCCATCATTCTCACCTCACAGAGTGAAGGCCAGCGACATGGGAATGGCAGTAAGATAACTTGCAGCAGCCCCTGGTGCACAACGAATGAAGGCACCATTAGCTGGGATGAGCCAGTCAGAGAGGTCAGAGTTTATGCAACAACTTTCACCATTAAGTAA

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001279 True 1821 mRNA 0.52 16 22646113 22752856

Neighbor

gene id symbol gene type direction distance location
AMCG00001276 NA coding upstream 38858 22584027 ~ 22607255 (+)
AMCG00001275 ercc3,LOC107706662 coding upstream 80493 22551140 ~ 22565620 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding upstream 103860 22540350 ~ 22542253 (+)
AMCG00001272 NA coding upstream 195223 22384720 ~ 22450890 (+)
AMCG00001271 NA coding upstream 324940 22302530 ~ 22321173 (+)
AMCG00001284 NA coding downstream 278448 23031304 ~ 23033499 (+)
AMCG00001285 NA coding downstream 348051 23100907 ~ 23119955 (+)
AMCG00001294 ino80d,LOC106582458 coding downstream 968967 23721823 ~ 23759069 (+)
AMCG00001300 NA coding downstream 1150472 23903328 ~ 23913809 (+)
AMCG00001298 NA coding downstream 1195593 23948449 ~ 23990082 (+)
G130160 NA non-coding upstream 20910 22624958 ~ 22625203 (+)
G130144 NA non-coding upstream 29956 22615284 ~ 22616157 (+)
G130153 NA non-coding upstream 63149 22582698 ~ 22582964 (+)
G130152 NA non-coding upstream 63492 22582316 ~ 22582621 (+)
G130125 NA non-coding upstream 319235 22326640 ~ 22326878 (+)
G130166 NA non-coding downstream 46241 22799097 ~ 22805058 (+)
G130346 NA non-coding downstream 462081 23214937 ~ 23217500 (+)
G130348 NA non-coding downstream 471176 23224032 ~ 23224597 (+)
G130365 LOC107575789,LOC100846954 non-coding downstream 527955 23280811 ~ 23281334 (+)
G130461 NA non-coding downstream 976149 23729005 ~ 23729229 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 115277 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 407459 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 653781 21971299 ~ 21992332 (+)
G129913 NA other upstream 1369234 21271384 ~ 21276879 (+)
G129877 NA other upstream 1567243 21077135 ~ 21078870 (+)
G130335 NA other downstream 413407 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 812295 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 1671709 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 1680937 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 1831323 24584179 ~ 24606472 (+)

Expression


Co-expression Network