AMCG00001298


Basic Information

Item Value
gene id AMCG00001298
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23948449 ~ 23990082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001298
GCCTTGCAGACGACATGTAGGTTTAAATCAGGGACTTGTGACCTAAACCACCAACGTGCGGCGGTCCAGGGCAAGTATAAGAGCATCGAGGAGCTGCCGGGACCCAGCCTGGCCACCACGGCGCACTGGCTCTTCATTAAGGGCTACGCGGACAGGAGTCACGCCATGCAGGTGGAGCACAAGAAGCTGTATGGCCCAATATGGCGCTCCCGGTTCGGCCCCTTCGAGGTAGTGAACGTGGCAACGGCAGATCTGATCGCCCAGGTGATCCGGCAGGAGGGCAAGTACCCCGTGCGAACCCACCTGCCTCACTGGAAGGAGTACCGTGACCTGAGGGGCCAGGCGTACGGGCTGCATATGCTGAAGCTGAGGGAGGTGTCTGCCTACAGCCCTGTGATCAACGAGGTCGTCTCGGACCTCCTGCGGCGCATCTACCGTCTCCGCCAGCGCAGCCCCGATGGGACCAAGGTCATCAATCTCGCAGAAGAGCTCTACAAATTTGGCTTTGAAGGGATCTCCTCCATCCTATTTGAGACTCGGCTGCGCTGTCTGGATGATGACGTTCCCCAGGACACACAGAAGTTCATAAAGGCCGCAGGGGAGATGCTGACCCTCTCGGAGACAGTCCTGTTCTTCCCCCAGTGGACTCGCGCTTTCCTTCCATTCTGGCAGAGGTTTGTCCAGGCCTGGGATGATCTGTACAATGTTGCCCAGAAGCTGATTGACCAGAAGGTGAAAGACATCAACGGTATGGTGAAGAAAGGTGAAGTTGTGGAGGGAATGTACCTCACATCCCTGCTGTCCTGTAGAAAGCTGTCTCTCCGCGAAATCTACATCAGCATCACAGAGCTGCTGCTGGGAGGGGTTGacacaACATCCAACACAATGTCATGGACACTCTACCACTTAGCTAGAGACCCAGGTAGTCAGGATCGGCTGTACCGAGAAATCACTTCAGTTTGTCCTGGGCACCAGGTCCCAACCACTGAGGACCTGGCCAAGATGCCATACATGAAGGCAGTCATTAAGGAGATACTAAGGTTATACCCCGTTGTTCCAGGAAATGGCCGTCTTACAGTGGACAATGAAGTGGTAGTGGATAACTACTTGTTCCCAAAGATGaCGCAGTTCCATTTGTGTCACTACGCCGCTAGCCATGACGAGAGTGAGTTCCCCAATGCGGAGAAGTTTCTTCCGGAGCGCTGGCTCAGAGGAGGAGAGCGGTTCCAGCACCACCCCTACAGCTCCATCCCGTTTGGAGTGGGGGTGCGCGCCTGCTTGGGCAAGAGGGTGGCAGAACTAGAAATGTACTTCGCCCTCTCCCGACTAATGCAGCATTTTGAAGTCCGGGCAGAAGCTGGAGCCAAGGACATCAAACCAAAGACACGCACACTTATGATCCCAAGGGATCCGATCCACCTGCACTTCATTTCCAGGAAGTGAAAGGAACAACAAAGAACTTCTCTGGAAACAGACTTAATTTAATCGTTTCTGTGTAACTGAGGGGAAGGTACTGTCCCAGTACTACCATTGATAGCTATAATGGATTCTGATacctttacattattaaatgttataaagTATAATCTGACACTCTTGGTGCATCCACAGCTTAAATCATCTACTTGTGTTCAAGCATTTGTAAAGAGAAGCTGTGAGATATTTTGCACTATAGCTATATCTATAGCTAAATCTAATTTCTGGCATTTTGATTGCATTCAATAATTAATCTATTGACTGTCactgtacatgtttattttctatgaaTTAAGGAggatttttaaattctgtacCATTATTAATTAAGTCAATTTGAAATGGTctatgattaaaatattaagttgTAAATAGACCTGTATTTCTGTGatgtagattatttatttattggtacaAAACAAATTAGTCGGTTATGTCCCAGAATAGGTAAAGGTTGTTAAAGGGGAAATAGTGTGGTCTGTAAATGATTGGTTTAGAGCAGGGGGTGCACAACATACGTCCAGATCCAGTATGTGAatgaacaaggaaaaaaaaaagatacatcaGCCCCCACTCCATCCGCACTTTGTTGCTGTTTCTCTTCCcttaattatgaatatattataattataaatgctaAATAGTTTTAGTTCACAATAGCTTTAATAGCTACAGTGGCTATACTGCATATTGCCTTCTGCAAATGAATGATTAAGATTTACTGTCTAGAGAAAGTGAGAAATACCAACAGACTAACACTCCtgacttgttttttcttgttctaaAATTTATTTGTGGGATTTCAGACATTTGGAATAtctttggatttgtttttgtttttttcttccaagtgCACTGATTTGTAGGCATACTGTATTTGAAACCTGTAGAGAGCAGATATTCTACATTTCTATAAACATGTTAAAACTCACTAAGTTTGTAATGTTCTGTGGATTTCAGCAATTTTGTGCGAGACATGATGTGTATTTcctaaattaagtaattgataaATAGTTTAAACAAACTGTATAAAGGGTTGCTGATAAAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001298 True 2528 mRNA 0.45 9 23948449 23990082

Neighbor

gene id symbol gene type direction distance location
AMCG00001300 NA coding upstream 34640 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 189380 23721823 ~ 23759069 (+)
AMCG00001285 NA coding upstream 828494 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 914950 23031304 ~ 23033499 (+)
AMCG00001279 NA coding upstream 1195593 22646113 ~ 22752856 (+)
AMCG00001297 tmem198a coding downstream 82347 24072429 ~ 24090849 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 190168 24180250 ~ 24207621 (+)
AMCG00001309 NA coding downstream 266754 24256836 ~ 24286635 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 332589 24322671 ~ 24351647 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 457539 24447621 ~ 24455129 (+)
G130530 NA non-coding upstream 22438 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 24572 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 92333 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 219220 23729005 ~ 23729229 (+)
G130365 LOC107575789,LOC100846954 non-coding upstream 667115 23280811 ~ 23281334 (+)
G130552 NA non-coding downstream 62740 24052822 ~ 24120461 (+)
G130648 NA non-coding downstream 761037 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 1032597 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 1066539 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 1096579 25086661 ~ 25086898 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 263328 23565151 ~ 23685121 (+)
G130335 NA other upstream 781793 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1417613 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1709795 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 1956117 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 434483 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 443711 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 594097 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1433605 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1745473 25735555 ~ 25749501 (+)

Expression


Co-expression Network