AMCG00001299 (dnpep,LOC106573845)


Basic Information

Item Value
gene id AMCG00001299
gene name dnpep,LOC106573845
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24180250 ~ 24207621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001299
ATCTCTCGGTCCACCCCCAGACACTCCACAGTGGGAGTTATCAGCTACTTCTTGGTCAAAGTCCTGAGACATGGAGCTCAGGTCACAGCCTGCTCCTTGGTGGCTTTGGTGGCAGCGAGGTGCCAGCTGTCACAGGCCAGACAGTTCCCAACACAGACAGGACATGATTTATCAACATCCTACCTCATCTGGGTACAGtgtgttgtgGCACCCAGCAGAcctcctgcagctctgggtCTGAAGGAACAGCTACCtgcagTGGTGGAGGAGTGCAAGTCGAGGCTGCAGGGAGCCGGGTTCACAGAGCTGAAGGAGTCCGACCATTGGGATATCAAGCCTGCCAATAAGtacTTTGTGACCAGGAATTATTCCACTATCATTGCATTTGCTGTAGGAGGGTTGTACAAGCCTGGCAATGGCTTTACCATGATTGGCGCCCACACGGACAGCCCCTGTCTGAGGGTCAAATCGCGCTCCAAGAAGTCCCAGCAGGGCTGCTTGCAAGTAGGGGTGGAGTGCTATGGGGGTGGCATCTGGAATACCTGGTTTGACAGGGACCTCACTGTCGCTGGCAGAGTCATTGTCAAGAAGGGGGACGTTTTGAACCAAAGGCTGGTTCACATCCCTCGGCCCATCCTGAGGATCCCCCACTTGGCCATCCACCTGCAGAGAGACATCAATGACAGCTTTGGCCCCAACAAGGAGAACCACCTTGTACCTATCCTAGCCACAGCTGTCCAGGAGGAACTGGAAACTGGCTCCTGTTCCTCTGGCGATGCCAGCAAAGCCATGACAACAGCTGAGAAACACCAGCCTGCCCTTGTCAACTTGCTTTGCTCCGAGCTTGGGGTGGAGAAGGAAGCCCTGATGGATTTTGAGCTGTGCCTTGCAGACATCCAGCCCGCAGCACTGGGTGGCGCCTTTGAGGAGTTCATCTTCTCCCCTCGCTTGGATAATCtccacagctgtttctgtgccCTGGAGggTCTTATGGAGTCCTGCAGCTCAGCTGAGTCCCTGGACAAAGACACCAATGTCCGTCTGGTGGCACTGTATGACAATGAGGAGGTGGGCTCAGAGAGTGCGCAGGGGGCCATGTCCTTCTTCACCGAGCTCATCCTGCGCCGCCTGTCCTCCAGCACCAACAACCTGACGGCCTTTGAGGAAGCAGTGCCTCGCTCCTGTATGATCAGTGCGGACATGGCCCACGCGGTGCACCCCAACTACCAagaGAAACATGAAGAGAATCACAGACCGTCTTTCCATAAGGGCCCTGTGATCAAGTTTAACAGCAACCAGCGCTATGCCACCACAGCTGTGACGGCCTCCGTGGTCAGAGAGATTGCAGACCGTGTCAGCGTGCCGCTGCAGGATGTCATGGTGAGGAACGACAGCCCCTGTGGCTCCACCATCGGCCCGATTCTCTCTGCCAAGCTGGGCCTGCCTGTGGTGGACCTGGGCAGCCCCCAGTTGGCCATGCACTCCATCCGTGAGATGTGCTGCACTTCAGGCGTCCTGCAGACCACAACGCTCTTT

Function

symbol description
dnpep Predicted to enable aminopeptidase activity; metallopeptidase activity; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Is expressed in female organism. Orthologous to human DNPEP (aspartyl aminopeptidase).

NR:

description
PREDICTED: aspartyl aminopeptidase isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01267 DNPEP; aspartyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001299 True 1536 mRNA 0.57 14 24180250 24207621

Neighbor

gene id symbol gene type direction distance location
AMCG00001297 tmem198a coding upstream 89401 24072429 ~ 24090849 (+)
AMCG00001298 NA coding upstream 190168 23948449 ~ 23990082 (+)
AMCG00001300 NA coding upstream 266441 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 421181 23721823 ~ 23759069 (+)
AMCG00001285 NA coding upstream 1060295 23100907 ~ 23119955 (+)
AMCG00001309 NA coding downstream 49215 24256836 ~ 24286635 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 115050 24322671 ~ 24351647 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 240000 24447621 ~ 24455129 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 273348 24480969 ~ 24490636 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding downstream 289037 24496658 ~ 24502375 (+)
G130552 NA non-coding upstream 59789 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 254239 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 256373 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 324134 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 451021 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 543498 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 815058 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 849000 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 879040 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 915973 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 495129 23565151 ~ 23685121 (+)
G130335 NA other upstream 1013594 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1649414 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1941596 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2187918 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 216944 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 226172 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 376558 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1216066 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1527934 25735555 ~ 25749501 (+)

Expression


Co-expression Network