AMCG00001302 (ptprn,ptprnb,LOC107748541)


Basic Information

Item Value
gene id AMCG00001302
gene name ptprn,ptprnb,LOC107748541
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24322671 ~ 24351647 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001302
ATGGGGGTAGGCTACAAACAGTGTCTTTCAAGAAGCCTCCTCTTGCCTCCTTCCGACAGGGGATTTTACTTTCTAGCATTCGGTCATTTCCATGGCAACGGCATGGCCCATTCTTCTgaccacccccctcccctctttcCCGCTGAGAGAAGTGATGGCCAGGGCGTCCCCCATGCGATGCGCGTTCGGGATGCCTCCCGCTGGGTGTTCCTCACGCTGGTGGGTGTGGCCTGTGTGGGGGGCGTTGTCATTGCTGCACTCACCATCGCCTGTCTGCGACACCACTCCCGCCAGCTCAGCTCTGGCAAGCTGGGTTTGGGGCCCGAGGGAGGCAGTGACACACACTTCGAATACCAGgagctgtGCCGACAGCACATGGCAGCCAAGACGTCATTCAGCCGACAGGAGGCGGGCGGCACGGACACATCGCGGGTCAGCAGCGTGTCCTCACAATTCAGCGATGTCCCCCAGGCCAGTCCCAGCTCGCACAGCAGCACCCCCTCCTGGTGTGAGGAGCCCGCACAGTCCAATATGGACATCTCTACGGGACACATGATACTGGCCTACATGGAGGACCATCTGAAGAACAAGGACAGGCTGCTGAAGGAGTGGGAGGCTCTGTGCTCCTACCAGGCTGAGCCCAGTGCCTGCTCTGTGGCCCAGAGTGAGACCAATGTTAAGAAGAACAGGAACCCTGACTTTGTGCCCTATGACCATTCACGAGTGAAACTCAAGGCAGACATTAATCCTTCAAGGACAGATTACATCAATGCCAGCACTATAATTGAACATGACCCACGGATGCCTGCTTACATCGCCACCCAGGGCCCACTGTCACACACTATTGCTGACTTTTGGCAAGACGGAGAGAAGCAGTGTGACCGCTACTGGCCAGATGAAGGCTCCTCCCTTTACCATATTTATGAGGTCAATCTGGTTTCGGAGCACATCTGGTGCAATGACTTCCTGGTGCGCAGTTTCTACCTGAAGAACGTACAGTCCCAGGAGACTCGAACCCTCACCCAGTTCCACTTCTTGAGCTGGCCTGCCCAGGGCATTCCCACCTCCACCCGCCCACTTCTGGACTTCCGCAGGAAGGTGAATAAGTGCTACAGAGGCCGATCCTGCCCTATAATTGTGCATTGCAGTGATGGCACTGGCAGGACTGGGACCTACATTCTGATTGACATGGTGCTCAACCGAATGGCCAAAGGAGTGAAGGAGATTGACATTGCTGCAACACTGGAACACATTCGAGATCAGAGGCCAGGGATGGTTCGGACCAAGGACCAATTTGAGTTTGCGCTGACAGCCGTTGCTGAAGAGGTCAATGCCATCCTGAAGGCCCTGCCACAGTGA

Function

symbol description
ptprnb Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).
ptprn Enables spectrin binding activity and ubiquitin-like protein ligase binding activity. Involved in several processes, including dense core granule maturation; insulin secretion; and positive regulation of type B pancreatic cell proliferation. Located in nucleus. Implicated in type 1 diabetes mellitus.

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase-like N isoform X2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001302 True 1359 mRNA 0.56 13 24322671 24351647

Neighbor

gene id symbol gene type direction distance location
AMCG00001309 NA coding upstream 36036 24256836 ~ 24286635 (+)
AMCG00001299 dnpep,LOC106573845 coding upstream 115050 24180250 ~ 24207621 (+)
AMCG00001297 tmem198a coding upstream 231822 24072429 ~ 24090849 (+)
AMCG00001298 NA coding upstream 332589 23948449 ~ 23990082 (+)
AMCG00001300 NA coding upstream 408862 23903328 ~ 23913809 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 95974 24447621 ~ 24455129 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 129322 24480969 ~ 24490636 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding downstream 145011 24496658 ~ 24502375 (+)
AMCG00001314 NA coding downstream 216718 24568365 ~ 24576371 (+)
AMCG00001317 NA coding downstream 294205 24645852 ~ 24659929 (+)
G130552 NA non-coding upstream 202210 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 396660 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 398794 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 466555 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 593442 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 399472 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 671032 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 704974 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 735014 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 771947 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 637550 23565151 ~ 23685121 (+)
G130335 NA other upstream 1156015 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1791835 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 2084017 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2330339 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 72918 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 82146 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 232532 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1072040 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1383908 25735555 ~ 25749501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031924 ptprnb coding NC_007117.7 CM002890.2 13920479 ~ 13987739 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_01405425_01412752 PTPRNB, PTPRN coding CI01000024 null 1405075 ~ 1412752 (-)