AMCG00001309


Basic Information

Item Value
gene id AMCG00001309
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24256836 ~ 24286635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001309
ATGAGACCAGAGGGGAACTGGGTTGACGGCAAGCAGGCCAGAGATTCAGGACATGGCCTAAATGGACTGTTTGGCCAGTGTCAGGATGCTTCTGTGCGGGAGAGGGTGCTGTACGACGTGACGGTCCCAGTGCTCCAGCGTCTGCAGGAGGTGCTCAAGCAGCTTATGATGCAGGGTTTGTCATGGCAGGATGAAATAACGCAGTACATAATTTCTCAGGAGATGAACCGTGTGCCTCGGACCTACTCCCCTACTTTTCCCAAGGAGGCCTACCTAGAACAATCCACTAAACCGGCGGAGTCCTCTGGGAAACTGTCCTACTCAAGCTCCAGGTCCCATTCTGGCCCTGACCGCCTGACTCCTGCCCTGATGCAGCGCTACCTAGACTACATGGTTCTCTCAGACCAGCCCCAGGCTTCACTCCGCATGCAGGCCCCGCTTATTGACCCGTATACCTATCCCCAGTTCGGATACCAGGAGGAAGAGAGGCTGGCGAGCTCCCTGGGGGCGGGTTATCCAAGGACGCCTCAGCGTTCTGGGGGAGCCCGGCCCAGTGATCGTGATCGGCAGCTGCTCCAGGATCTTCTGTCCCTCTATCTCTCTGCTGGACAGCCCCCCCGGGAAAAGGAGACTGCGTCTTCTTTGTATCATGAGGAGCCCGACTTCCCTCTAGCCTACAGCCAGGACTATGACCAGGCCTCCGAGAGAGAGGCccagaacaaacagaaaaagattCCACGTGGTCCCAGCACCCTGCCTCCCAAGGATGACGCCACGCAGAAGAAATTAGGAGCCATGCTGGGGAAATACGGCATCGATGTGAACGATCTGAGTGCCCAGCAACTGAACAGTCTAACTTCTACTCTGAAGCTGCTGCAAAACAACCTGCAGGACCAAACAGATCTATTGGAAGACAACATAATCTCAAAGAAAAAGCCTGAGCTGAGCGAAGGGGACATGACACACCTGGGCGAGAGGGAAAGCGATCGTTTCGAAAAGCTGCCCGTCCCACAGCTAGAGCCCCAGCCAGCAGCCACCGGGGTCCCCATCACTCCCTCGGGGATCATGGGTGCCAGCTCTGTCGGAGAAGGGGCCAGTGTGTCCATTGAGGGAGTGGAGGTGATAAAAAAGAGCTCCAAGGCCCCCAGTCTGAACGTGGCTGCAACACCCTCTCACACCAAGGAAGAGTATGGCTACATCGTCACCAATCAGAAGCCCCTCAGTCTGTTTGATGGTGTGAGGCTACTGGAGACCCTAGCAGAGAAGATCCATCTCACCACCAGCTCATTTATCAACATCAGCTAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001309 True 1305 mRNA 0.56 10 24256836 24286635

Neighbor

gene id symbol gene type direction distance location
AMCG00001299 dnpep,LOC106573845 coding upstream 49215 24180250 ~ 24207621 (+)
AMCG00001297 tmem198a coding upstream 165987 24072429 ~ 24090849 (+)
AMCG00001298 NA coding upstream 266754 23948449 ~ 23990082 (+)
AMCG00001300 NA coding upstream 343027 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 497767 23721823 ~ 23759069 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 36036 24322671 ~ 24351647 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 160986 24447621 ~ 24455129 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 194334 24480969 ~ 24490636 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding downstream 210023 24496658 ~ 24502375 (+)
AMCG00001314 NA coding downstream 281730 24568365 ~ 24576371 (+)
G130552 NA non-coding upstream 136375 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 330825 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 332959 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 400720 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 527607 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 464484 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 736044 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 769986 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 800026 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 836959 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 571715 23565151 ~ 23685121 (+)
G130335 NA other upstream 1090180 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1726000 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 2018182 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2264504 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 137930 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 147158 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 297544 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1137052 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1448920 25735555 ~ 25749501 (+)

Expression


Co-expression Network