AMCG00001311 (tuba8l2,LOC108411703,LOC103042625,LOC107750365)


Basic Information

Item Value
gene id AMCG00001311
gene name tuba8l2,LOC108411703,LOC103042625,LOC107750365
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24480969 ~ 24490636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001311
ATGCTTCTGGGCTCCACCAGCGCATTGCAGCAAAGCACCTATAACTGGTTTGAAAAGTTGTTCCGCCTGGCActggatatttttaaaactgcgTGTCTGTGGGAGTGTCGGAAACCCCACTGGTCCCCTGACTGGGGCTCCTCCTCTCGTGTTTGCCCAGCATATATAACCCAGCAGCCGGCAGAGCTCCACGAGTCACTCACGGAGACCACTTTGCAGCGTGAATGCATTTCTGTACATGTTGGCCAAGCCGGAGTCCAGATGGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAGCACGGGATCCAGCCTGATGGCCAGATGCCCAGCAACAAACCTGTGGGAGGGCATGACGATTCCTTCACCACCTTCTTTAGCGATACAGGGGCTGGTAAATACGTGCCCAGGGCAATCTTTGTTGACCTGGAGCCCACCGTCATTGatgAGGTGCGCACAGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGCAAAGAGGACGCTGCCAACAACTACGCCCGTGGGCACTACACCATCGGCAAGGAGATCATTGACTCTGTTCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGCCTCCAAGGGTTCCTGGTATTTCACAGCTTCGGTGGTGGTACTGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTCTCTGTAGATTTTGGTAAGAAGTCCAAGCTGGAGTTTGCGGTCTACCCAGCTCCCCAGGTGTCCACAGCTGTGGTTGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGCGCCTTCATGGTCGACAATGAGGCCATCTATGACATCTGCCGCAGAAACCTGGACATTGAGCGTCCATCCTATACCAACCTCAATAGGCTGATCAGCCAGATTGTCTCCTCCATCACCGCCTCCCTGCGCTTCGACGGTGCCCTGAATGTGGACCTGACGGAGTTCCAGACCAACTTGGTGCCCTACCCCCGTATCCACTTCCCCCTGGCCACCTACGCTCCAGTGATCTCTGCTGAGAGGGCCTATCATGAGCAGCTGTCTGTGGCTGAGATCACCAACTCCTGCTTTGAGCCAGCCAACCAGATGGTGAAGTGTGACCCCCGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGAGATGTGGTGCCCAAGGATGTTAATGTTGCCATCGCCACCATCAAGACCAAGAGGAGCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTGGGCATCAACTACCAGCCCCCCACCGTGGTGCCTGGGGGCGACCTGGCCAAGGTGCGGAGGGCTGTGTGCATGCTGAGCAACACCACTGCCATTGCCGAGGCCTGGGCCCGCCTGGACCACAAGTTCGACCTGATGTACGCCAAGCGTGCCTTTGTCCATTGGTATGTGGGAGAGGGCATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCAGCCCTGGAGAAGGACTATGAAGAGGTGGGCATCGACTCTTttgaaggagaagaggaaggagaagagTACTAAGAGAGAAGCCCAAGTGAagccagagagggagagatttgCTAGATGTGCCAAATGCAGACGATGCTAGAAGATGACATTGCTTGCTTGGAAAAAATTAATCGAATCCAAAGTCCTTAATCTCTCCATAATCAAAGAATAACCTACAAGtaaaaaatacagctgttgGAATACAGTTCCTAGTATCACATAAAACCAATCTATTAACCACAGTAATTTGGTTTCCAAGAATGTCTAAACCCAAGTGTCCAGATATTTCTGGTTTTTGAGAAGAATTTACCATCCCTAGATTGTAAAGAATCTGTTTTCAGGCTCTATTGTTATTCTTAAGGAGACAAAGTTGGACTtgtatcagtttattttcaaacttCTCTGTGTATAGTTCCCCACACCTGCAAAAATGCACATTCTGAACCCAACCCATCACTTGAGACCATTACAAATTGGTCTGCTTGGGCTGTTTGCACAGTTCAGTCCTCAATCTGCAGGAACAATCCTATTTGTTCATTCAACACAAACTAAAATTATTTGGTGCAAAGGAAAATGGACATTCAGTGAGTCTCTCGTTGGCGAACCACCGCAATTGGCTGCCAAGTGCTTGCCCTGAATTGCTGGAAATCTTTTGGGTGAAACACCCATgttttgggtttatttatttcagtgggaCTTTAGAAACACTCATGTTGCTGCTTGTTTCTGTTACCAagtgcaatattttatttgggaAACGCTGATGCATACAGAACCTGTTGTGAATGTCGGAAGCTCTTACTTTTGTAAATAAACGTGTTAAACCCAGAA

Function

symbol description
tuba8l2 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

NR:

description
PREDICTED: tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001311 True 2364 mRNA 0.51 4 24480969 24490636

Neighbor

gene id symbol gene type direction distance location
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding upstream 25840 24447621 ~ 24455129 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding upstream 129322 24322671 ~ 24351647 (+)
AMCG00001309 NA coding upstream 194334 24256836 ~ 24286635 (+)
AMCG00001299 dnpep,LOC106573845 coding upstream 273348 24180250 ~ 24207621 (+)
AMCG00001297 tmem198a coding upstream 390120 24072429 ~ 24090849 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding downstream 6022 24496658 ~ 24502375 (+)
AMCG00001314 NA coding downstream 77729 24568365 ~ 24576371 (+)
AMCG00001317 NA coding downstream 155216 24645852 ~ 24659929 (+)
AMCG00001319 NA coding downstream 212007 24702643 ~ 24861705 (+)
AMCG00001322 NA coding downstream 539267 25029903 ~ 25044812 (+)
G130552 NA non-coding upstream 360508 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 554958 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 557092 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 624853 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 751740 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 260483 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 532043 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 565985 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 596025 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 632958 25123594 ~ 25126079 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 26584 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 34736 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 795848 23565151 ~ 23685121 (+)
G130335 NA other upstream 1314313 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1950133 22500035 ~ 22530836 (+)
AMCG00001315 NA other downstream 93543 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 933051 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1244919 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 2365963 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 2413727 26904363 ~ 26954597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding CI01000299 null 2696632 ~ 2704220 (+)