AMCG00001315


Basic Information

Item Value
gene id AMCG00001315
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24584179 ~ 24606472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001315
ATGTTGGCTGAAATTCCCAGATGCCCTTTGACCTCTGGTCATTTGCAGAAGATGAGCTGCACCAAACATGAGAAGGTAGCTGTGCCCAGGCAGGCTGGAAGCAGGAGGACGCGTCCACAAAAGAGCTGCTACTTTGGAGTGGAGGTGTCAGAGGAGCTGGTGTGGGACACCTGGGAGCTGGGCAGGGAGATCACCAAGACCCTGCAACTCAAGAACgttcacattaaaatgcaaaagcttCGATTCAAGTCTCCCTCTTCGAAATTCTTCACCACTTTGTTTCCTCAAACCATTGTGCTAAGCCCTGGTACTTCGTTCTCACTGCCTGTGACATTCCGCTCCTTAGAAAAGCGCGAGAACTCCGATGCCATTGAGTTTGAGTGCAAAGAGGGGGTGTTTCGCGTGCTGCTCCGTGCCACACTCCCTCGCCACATGCTCGAGATGCCTGAGTCTGTGCTTGTGCCAGCCTGTGCTGCTTTTGATAGCTCTCGGGTCATCTTCTTCTTCCGCAATGCCAGTAAGCTTGTGACATCATTCTCCTGGGTTGTGCCCGAGCCTTTCCAGTTCACCCCAATGTCGGGGCAGGAGGACACACAGAGCGTGCTAGACTTTGGTGCTGTGGCTGTGGGGGATGCCGTGGAAAAGCACTTTGAGATTCACAACCTGTCATCTGTGAGAGCTCCATTTCGAGTTGCCCAGGCCGCCCGCCCCTCACTGCTGGAGGATGTGTTCTTCTGTGAGGCCCAGCAGGGCAGCGTGCCAGGGGTCAGCACACTGACGCTCCCAGTGCGCTTTAGCCCTAAGACTGTGGGCAGCACCAGTGTGGATTACTTCTACATCACCTCTGCAGGCAATGTCTGCAAGGCTGTTGTGAAGGTGACCGGATCCTGCAAAGGTCCTCTGGTTTCCTTATCCAGCTCTGTTGTGGATTTCGGCCTTGTAGAGCTGGGGGAGTTTGCAGTACGCACACTGCAAATTGTCAACACCTCGGACGTACCTGCACATTACCAGTTTAGTATCGACTGCAGCTACAGTGTCTTCTCCGTTGACAAGCCCTGGGGTGTGCTTGCTGGGGAGAGCTCCCTCACCCTGCGCCTCTGCTTTCAGCCCAGCCATCCCATCAGCCACTACAGGAGAGTGGCCTGCTTCATCCACCACCAAAAGCCCATTTTCCTGGACCTGATAGGCACCTGTCACTCAGAGCAGCTGAAACCGGCAATTCTAAAGCCCAAACATCTGCGTCTCTATAGCatcagagagaggagggggctGACCATCTACCCCCCAGACATCCTGAGTGCCATGGTGGCCGAGAAAAAACTCCTGTTGGATGAGAATGGGGCGCTGTTCCTCCCATTGCAGGAATCTGACGGGGACCCTGCTGAGCCTCCCCCTGTGTCTGACCCTGTGGGAGAAGACCTCAAGGAGGGCTGGGGTGATGACGTCCTGAGGTTCCGTCACGTGACCCTTGACCCCCCGGAGATCCTCTTCCACAACGGCCCATGCTCCCGCCCCCTCTCCTTGACCAACCACACCAAGGGAAGGCTGACGATCATCTGGACCAGTCTTGTGGGGAGCCCCTTCAGTGTGACCCCCCTGACCTGTGACCTCCCTCCTCTGAAGACCTCTGCCTTCAGGATCAACTACAGCCCTGGCCAGGACAACACTTTCCACGGTGCCGAGCTGGAGTGCTTCGCCTTCTATACGGTAGAATTCTATTACTTCAGGGTTGTGAAGGACCAGCAGTACATGGAGGACAGCACCATGTGTCCGCCCTGGTGTGGGACCTTGAGAGTCAGCGGTCACTCATTTCAGCCTGGCCACCAGCACTTCATCCCACGCTACACCCTGCAGCAGCCCACACTGGTATTCCCTACCCTGAACCAGCAAGCCTGTAAGTCCATTCTGTTCCAGAATAATGGAGAGCTACCCATCACCTTCAGCCTGGACCCAAATAACTTGTCTGTGGTCAAGCTGCATCCCACCAGTGGGTTGGTACAGCCTGGAACTCACCAGATCTTCACTCTGAGGAAAACTCCTGCAGAAGAGAATGGCCAAAAACACATCCTGTCTTTGCAGCTGAACGCCTCCCAGAATCACATCCAGGAAATCACTGTGATCAGTGTGGCCGAGAAGCCCAGAATTTCCTTGGAGGGAGACGGCACTCTGTTCTTCAAGCCCACTGCTGTTGGCTTATCTTCTGAACGCTCTTACCTCATAAAGAATGTCAGTTGCGTGCCTCTGACTTTTGAATGGAGGATATGGAGTCCGGATTCTCAAGTGCTGTCTGTCTCGCCCAAGGAGGGCATCCTTCAACCCAACGAATCCTTGGCTGAGAGCCCTGTTGTGGACCTGGGGCCTGTGCTAGTTGGCAGCTGTCAGATGTGTGACCTGGTGCTGCTAAACCACGGTTCCTATCCTCTCAGGTTCTCCCTTACAATAGAGCAAGGTTTCACTGGGCCATGCCTGCCTGAGGAACTCCAAAATGACCCCATTGGTACagcaaacttttaa
>TU163730
AGCTATTCTAGGCTTGCACTGAGTGGATTGCTGTTTGGACAATATAACTGTGTTGTGATTTTTAGTTTCTATTTTCCAAAATAGTGTTCACTCTGAAGAAGAGCTGCAATGTTGGCTGAAATTCCCAGATGCCCTTTGACCTCTGGTCATTTGCAGAAGATGAGCTGCACCAAACATGAGAAGGTAGCTGTGCCCAGGCAGGCTGGAAGCAGGAGGACGCGTCCACAAAAGAGCTGCTACTTTGGAGTGGAGGTGTCAGAGGAGCTGGTGTGGGACACCTGGGAGCTGGGCAGGGAGATCACCAAGACCCTGCAACTCAAGAACgttcacattaaaatgcaaaagcttCGATTCAAGTCTCCCTCTTCGAAATTCTTCACCACTTTGTTTCCTCAAACCATTGTGCTAAGCCCTGGTACTTCGTTCTCACTGCCTGTGACATTCCGCTCCTTAGAAAAGCGCGAGAACTCCGATGCCATTGAGTTTGAGTGCAAAGAGGGGGTGTTTCGCGTGCTGCTCCGTGCCACACTCCCTCGCCACATGCTCGAGATGCCTGAGTCTGTGCTTGTGCCAGCCTGTGCTGCTTTTGATAGCTCTCGGGTCATCTTCTTCTTCCGCAATGCCAGTAAGCTTGTGACATCATTCTCCTGGGTTGTGCCCGAGCCTTTCCAGTTCACCCCAGTCAGCGGCACCCTGGAGCCGGN

Function

GO: NA

KEGG:

id description
K24226 CFAP65; cilia- and flagella-associated protein 65

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001315 True 2514 mRNA 0.55 16 24587338 24606472
TU163730 False 704 TUCP 0.51 6 24584179 24591475

Neighbor

gene id symbol gene type direction distance location
AMCG00001314 NA coding upstream 7808 24568365 ~ 24576371 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding upstream 81804 24496658 ~ 24502375 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding upstream 93543 24480969 ~ 24490636 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding upstream 129050 24447621 ~ 24455129 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding upstream 232532 24322671 ~ 24351647 (+)
AMCG00001317 NA coding downstream 39380 24645852 ~ 24659929 (+)
AMCG00001319 NA coding downstream 96171 24702643 ~ 24861705 (+)
AMCG00001322 NA coding downstream 423431 25029903 ~ 25044812 (+)
AMCG00001324 NA coding downstream 513164 25119636 ~ 25146056 (+)
AMCG00001329 NA coding downstream 543825 25150297 ~ 25150756 (+)
G130552 NA non-coding upstream 463718 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 658168 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 660302 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 728063 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 854950 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 144647 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 416207 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 450149 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 480189 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 517122 25123594 ~ 25126079 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 129794 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 137946 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 899058 23565151 ~ 23685121 (+)
G130335 NA other upstream 1417523 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 2053343 22500035 ~ 22530836 (+)
AMCG00001331 NA other downstream 817215 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1129083 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 2250127 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 2297891 26904363 ~ 26954597 (+)

Expression


Co-expression Network