AMCG00001338


Basic Information

Item Value
gene id AMCG00001338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25718904 ~ 25725679 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001338
AAACAGATATCTTATTTTTGGCCTCACTGGGGGACAGCAGTTTAAACagagatttttaaataacagtaatattTATGAACATACGtgtttaataatcatttagaaAATGTTGATTACAGATTTACAaaccagctgtgtgtttgtgtgtcacagCCTATGGGACATGGAAGAGAATGTGAGAGAAAATGAATTGTGTGCCGAGGGCGGAAATGCATTACTGGAAGCAGAGGCCAGCGCTGCAGACGAAGCGGAGAATTCCCAGCACACCTACCAGcaGTTGCCCTGCATCAGTGCCGGAAAGTCGAGACTGGAGCTCCAAGGGCTCCCGATCGCGTTGCAGCTTCCAGAAGATTCCCAGGCCTCACAAAATGCCTCGGAGCAGGGGGTGCAGAACCAGCCCGACGAGTTCATAATTTTTGACCAGAATGGGCAGCCAATCCCGTACGAGCGCATGATGATCGTCTCCAGCCAATCAGAGAACGGCCCGGTCTACGTGATTCCGTCCAGCCAATTAGGAGCCGCGCATGTGTTGCTACCTCAGGGACAGCTCCTAGACGTCACCGATACGCCACACTGCTGTGAAGATAAGGTGGGCAGGGACGAGCTACAGACTGTGGCCGTGACAGCAATAGCAGACAGCACGAGCAACTATGTGGCACCAGCGCAGCCGGTTGGCACGCTGGGTAAAAACACAGCGCCGAGCTCAGCGGAGAACTTTGCAGTGCCTCTTCAGCCCCTGCCCCTCAATACACCACCCTGGGCTCGAAGACTGCGCGGCTGTGAGaaaatcGGGGACTCGTACCGGGGCTACTGTGCCAGCGAGGTGGAGCTGGAGGCCGTTCTGACGCTGCACAAGCAGCAGACGCACAGCGTGTGGGGCACCCGGCAGTCTCCCTCCCCCGCCAAGCCCGCCACCCGGCTCATGTGGAAGTCTCAGTACGTGCCCTACGACGGCATCCCCTTCGTCAACGCAGggaGCCGAGCAATAGTGATGGAGTGTCAGTTTGGCCCAAGGCGGAAAGGAGTCCAGCCCAAAAAGTCTGTTGAACACGAGATTATCCTTAACCACCAATACAAAGCCACCTGCCCAGCGAGGTATTACGTCCAGCTGCCAACCCAGAAGGCCCACTTGTACCACGACATGGATGCCCCCTACCTCCCACTGCCCCCAGGCCCGCTGCCCCCGCCGGAGGAGGAAGagccggaggaggaggagctggagccCCTGCCCGAGGACACCAGCTGTGTCCCGTCCCGCCTGCACCCGCGCGTGGCCGAGAAGATCTGTGAGCTGGTCTCTCAGGGGATGCACCAGGTCTACATGGTCAGGAAACAGCTCAGGAAGTTTGTGGAGCGAGAGCTGTTCAAACCGGATGAAGTGCCAGAGAGACACAATCTGTGCTACTTCCCCACCTGGACCACAGGCAGTGAAAACCCACTGACAGAGACCGTGACCTTGACACTAGCGCCAACAACTGTTGAAGTAAGCTCACAGAAGACAGGGGGTCTGGAAGGCAGTGACACCCTCTCACCAGAGGCAGTGCAGCTGTTCAGCTCCCTCACTTCCTTGCAGCCCAAGATCTTTGCCCAGCTACATGGGATTCAGCTGCAACCGTCATTAGGCCCGGGTGATGGGGCTCCTTCTCTAGTGACCGTGATGCCCCAAGGTCAACCCACGCCACTCTGCCCGGCCCCGGAGCTCCTGGACTCTGGCAGCCCACCGGCCCCCCAGCTGCTGCTCAGCCCCGCGCAGTTCCTCCAGCCCAGCGCCTCCCTGTCTGAGAGCTCGCCCGTGCCCCCCGCCCTGGTCAACGTATCCCTGCCTGACCCCGCGCTGCTGGGCATGGGGCAGCTGGTGACCGTGTCAGCCCTCGGGGAGGGCGCCGCCGAGGGGGGGATGCACCAGATCCTGCTGGGGGACGGGCAGACCATCCCTGTTCACATCGTGGGCGATCCTGGCAACATTGCTCACTCCAGCCCGCTCTCCCTGGCCCAGGTGAAAGTGGAACTGGAGGAGAACAACAACTCCTCGAGCATCAGCTCTGCAGAAAACTGATGGCCCAAGCTCAACGGTCAACGCCACTGCCTGTCTCTGGGATGTGAGAACGAACTTGTGCTCTCCGTGCCGGGAAACCGCCAGAGGCCACCTTGttgtttgactgtttttttctcttctttttatatccattttaaaagcatacGGACTTATGGAGTATAGTGTCACTTTCCAGAAGGGAGAGTGAGGTTAATAGTACAAAAGGGACAAAAAGATATCTATGCAagaagttttcatttttatttttgcactttttgttttcttctacttgttgtatttgtaatactTCACTGACCTTGCAAAGTCCAAGTCTAAGtaagcagaaatgtttttttccgttattgtatttttcatgttgAGTACTTTCTGTTAACCCAAGCAAGCCTTAAATATTCACGTCAACACAGCACTGTTAAAGGCAAGATATGAACCTTTTATAAGCGACAaggatatataatatttattgtaaataatttgATTCACGAGGAAAATGTGATGAGGGGTCAGTATGTGAGTGAAATCCAACTGATGGTTTTTACGTATTAGTCTCATTAAGAAATGTGCTGTTAAGGTAATTTCATTTATTATGTTCACTGCTATTTATTTACTCCAAGGCAACTTATTGTTTGTGTTAGAACTTAAATCCCCAAGTATTGTACAAAGTCACATAGTACAAAATCATTTCATGGTGAATACAAGAATACAggacaagaaaaacagcaaacaccGTACAAAGATTGTTTCATTGTGCCAAAGCTGTGCACATTTGTCCTGTTGAGTGTATTTTCAGCTGCGTAATTCATTGACGGGGACAGTGACTGTTTCTTTTTCACTGGGGTTTAATTGAGcaatccatttttatataataatgttatctTATGCTGAAATCACTGTTGAGCGATGTTTTTAGGTTGTTCATATGTGGTGGGCCCCAGGCCTTCCT

Function

GO: NA

KEGG:

id description
K21595 CARF; calcium-responsive transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001338 True 2999 mRNA 0.52 13 25718904 25725679

Neighbor

gene id symbol gene type direction distance location
AMCG00001333 NA coding upstream 45137 25663865 ~ 25673767 (+)
AMCG00001335 NA coding upstream 82565 25630047 ~ 25636339 (+)
AMCG00001334 NA coding upstream 137528 25552444 ~ 25581376 (+)
AMCG00001332 NA coding upstream 353608 25363893 ~ 25365296 (+)
AMCG00001328 NA coding upstream 416216 25299096 ~ 25302688 (+)
AMCG00001348 als2,LOC106574246 coding downstream 296302 26021981 ~ 26069510 (+)
AMCG00001350 NA coding downstream 349891 26075570 ~ 26097013 (+)
AMCG00001349 NA coding downstream 374599 26100278 ~ 26117478 (+)
AMCG00001351 NA coding downstream 397164 26122843 ~ 26140826 (+)
AMCG00001352 NA coding downstream 462210 26187889 ~ 26189870 (+)
G130817 NA non-coding upstream 43422 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 85328 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 136298 25582342 ~ 25582606 (+)
G130773 NA non-coding upstream 268046 25450516 ~ 25450858 (+)
G130757 NA non-coding upstream 321270 25382179 ~ 25397634 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding downstream 2174 25727853 ~ 25729837 (+)
G130884 NA non-coding downstream 335469 26061148 ~ 26062693 (+)
G130948 NA non-coding downstream 571028 26296707 ~ 26335290 (+)
G131017 NA non-coding downstream 1045201 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 1067592 26793271 ~ 26793553 (+)
AMCG00001331 NA other upstream 268594 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1112432 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1264519 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1272671 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 2033783 23565151 ~ 23685121 (+)
AMCG00001337 sumo1 other downstream 9876 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 1130920 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 1178684 26904363 ~ 26954597 (+)

Expression


Co-expression Network