AMCG00001349


Basic Information

Item Value
gene id AMCG00001349
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26100278 ~ 26117478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001349
AACAGCGAACAACAGCATGGCCGGCCAGTGATCGGCCTGTGTGTTAATCTCTACTTTGTAATGCAAGTTTGTAGTGTGTAAAGATAGGAAATCGCCAAAAATAAACGATGGAAAGAGAAAAGTCGAGGGTCCAAAGCCCACGCAGGAGGGAGCTGCCAGCCACGCTCCAGCCAATGGCACGTGCCCCCCGAGCTCTACCACCAATGCCAAGCCAAGACACAGGAGatgaGTTGCCTCTAAGCAAACCCAAAAAGAAGAGGAGCAAACCAACGAATGGAGTAGGAGACTCAGATGAAACTGGCATGATGCCGGGCAGCCGCAGACAGTCGGAGAGCAGAGAGCCGCTGACCCCCGAACCCCAGGACGTGCCCCcgcagaggaagaggaagaagaagaagttgCAGACGCCAGATGCAGAATCCTCCTTCATGCACCACACCTCCTCTGATCCCTCCGCTCAGCAGGACCTGGACAATGGGGATGGAGTGGAGGCCATCAACGGGGAGGAACTGACTCGCAAGCCCAGAAAGAGAACAAAgaaaACAAAGGGGACTGAGCTGCAGTATGCCAACGAGCTGGGTGTAGAGGAAGATGACATAATCACTGACGTCCAGCCACCTATTCCTCAGCATTCCCTGTTCTCAGCTCCTCTGGGCAACAGCCAGCCCGTCGGCAAAttgtttgtggaaaaaaatcGAAAATTCCAGGCCGCAGACCGGTCAGACTTCAACAGACATACAGAGGAGGTGGACGACTACATGGAGGTGAAGCCCCTGTGGACAACCAGAGATGTGGCCATGAAGGTGCACCGGGGATTCAGGGTCATCGGCCTGTTTTGTCATGGCTTTCTGGCGGGTTATGCGGTGTGGAACATTATCGTGGTGTACGTGCTGGCAGGGAACCAGCTCACCACCCTCCCCAACCTCCTGCAGCAGTACAAGACCCTGGCCTACCCTGCGCAGTCCCTGCTCTACCTGCTGCTGGCCATCAGCACGGTGTCCGCATTTGACCGGGTCAACCTGGCCAAGGCGTCAATGGCACTGCGAGGGTTCCTCACCCTTGACCCAGTTGCTCTGGCTTCGTTCTTGTATTTTGCAGCTCTGCTCATGTCTTTGACCCAACAGATGACCAGCGACCGGATAAACCTTTATACACCTGACAACGAAACCTTATGGCCTCCTGGCTCTGAGCACAACATCCTTCAGTCGTGGATTGCGGTCAATCTGGTGGTGGCTCTCCTGGTTGGACTGGCCTGGGTGTTCCTCTCCACCCGACCAGAGGTGGATTACACAGAAGAGGATATGTTTGGTTTGGATGTTGAAGAATACCCAAAGCAAGAGGAAAGACATGAAATTCAAGCCTgaactgattattttttattttttatatgtaatctACATTTGTTGTATTACAAAAATCAAATGACATACTCTCATTCAATGTTTCTaagaaatctatttttttattgtgttttattaagtatatatgtgtatatatttatatatagatatccaTTTTTAACTTGAACTGTCTTGCacaatgtatctatttttaaaaatacagtgggACCTGTGTGAAAGA

Function

GO:

id name namespace
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K22765 TMEM237; transmembrane protein 237

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001349 True 1581 mRNA 0.50 14 26100278 26117478

Neighbor

gene id symbol gene type direction distance location
AMCG00001350 NA coding upstream 3265 26075570 ~ 26097013 (+)
AMCG00001348 als2,LOC106574246 coding upstream 30768 26021981 ~ 26069510 (+)
AMCG00001338 NA coding upstream 374599 25718904 ~ 25725679 (+)
AMCG00001333 NA coding upstream 426511 25663865 ~ 25673767 (+)
AMCG00001335 NA coding upstream 463939 25630047 ~ 25636339 (+)
AMCG00001351 NA coding downstream 5365 26122843 ~ 26140826 (+)
AMCG00001352 NA coding downstream 70411 26187889 ~ 26189870 (+)
AMCG00001347 LOC103029249,LOC108423993 coding downstream 113808 26231286 ~ 26268997 (+)
AMCG00001353 NA coding downstream 166982 26284460 ~ 26290848 (+)
AMCG00001355 NA coding downstream 327603 26445081 ~ 26453330 (+)
G130884 NA non-coding upstream 37585 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 370441 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 424796 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 466702 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 517672 25582342 ~ 25582606 (+)
G130948 NA non-coding downstream 179229 26296707 ~ 26335290 (+)
G131017 NA non-coding downstream 653402 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 675793 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 861297 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 350777 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 649968 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1493806 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1645893 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1654045 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 739121 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 786885 26904363 ~ 26954597 (+)

Expression


Co-expression Network