AMCG00001350


Basic Information

Item Value
gene id AMCG00001350
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26075570 ~ 26097013 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001350
CCCTTGGACCTGGCGGGAGACTGTCAGTGGACTGCAGCCCGGCTACGGTCACAATGAAACAGCCCATAGACGCCGAGCCTGTGACACCCTCAGGACTTAATGAGAATGGTCTGTCTCAGATTCTAGAGAACGTCGTAGAGGAAGTGAGAATATCGATCAGTCGGGATATAAGCGGAGCGGACCTCCTCTATAGCCTTTTGAATGCCCCCTGGCTACAGTCGCTGCTGAAGGTGTACGAATGTCTACAGCAGTATCTTCAGGGGAGTCCCAGCCCCTTCCTCCCTTATGCATCTGGACTCTCCCAGGAGGCTGTGCTCTCGGCGCACGACACTGTGGCACAGAAGGACTTTGAGCCGGTTCTGCCCCCTCTGCCCGACAACAttccagaggaggaggaggccatGCGCATCGTGTGCCTTGTGAAGAACAAGCAGCCTTTGggtGCAACAATAAAGAAGAATGAAATCACGGGGGAGATATTGGTTGCCCGGGTAATACATGGAGGCCTGGCTGATCGCAGTGGGCTGCTGTATGCTGGAGATAAACTAGTGGAGGTGAATGGACACCCTGTGGAGGGCCTGGAGCCAGAACAAGTGATCCACATCCTGGCCCAGTCTCATGGTACCATTGTGTTCAAGGTGGTTCCTATCTCAGACAGGCCAGTGAACAGTCAGACCATGCTGTATGTGAGAGCCATGGCCGACTACAGCCCCCAGCAGGACCCGGCTATACCCTGCGCCGATGCCGGGATGGCCTTCCGGAAAGGGGATATCCTGGAGATTGTAGACCAGACGGACACCCTCTGGTGGCAGGCAAAGAAACTACCCAACACCTCCACGTGCGCAGGCCTCATCCCCTCCACCACCCTGCTCAAGAggaaACAACGCGAGTTCTGGTGGTCGCAGCCCTTTCAGCCTCATACCTGTGTCAAAATTtTGAGTACTGTGGACGAAGaggaagaCATGATGACAATCGATGAGAAATGTGTTGAAACAGCTGGGTTTCGCCGGAGCATGCGTCTGTTCAGGAGGAAGTCCCACAGCACCCACCAGCAGACGTGCTACTCTCGCTGCCCCAGCAGCTGCTACAGTGCCCTGGCCTCCCCATACGAGGATGTGGTGAGGTACCAGCGCCTGCCGGAGGACAGAAACCGGCTAATCGTTCTCGTGGGTCCGTCTGGCGTGGGGATCAATGAACTCCGGAGACGGTTGATTGAAATCAACCCGAAGATCTTTCAGGGGGCAGTTCCACATACAACCCGTCCCCCAAAGACCTATGAGGAAACTGGCAGGGAGTATCACTTCATTTCAAAGGAGATGTTTGAAAACATGGTTTACAATAACAGGTTCCTCGAATATGGGGAATATAAGGGCCACTTATATGGGACCAGTATTGATTCTGTCAAGGACGTTTTGGAGGATGGAAAGATCTGTATCATTGACTTAGAGCCACAGGGACTCCCAGGGGTGAGGACCCATGAACTCAAGGggtatattatatttatcaagcCCCCCAGCATCATTCGAATGAAGCACAGCAGGAGGAATGCAAAGATCATCACAGAGTATTACGTCAACCGCTATTTCAGGGACGAGGACTTCCAGGAAATGGAGGACCTGGCGAAGAAGATGGAGATGAATTACTGCCAGTTTTTTGACCACACGATCGTAAACGACAGCCTGCAGGACTCCTGTGTCCAGCTGCTCACGGCCGTGCGGAGAGCTCAGGATGAGCCACAATGGGTCCCCGCCAACTGGCTCAGGCCCACTGAGGAACCC

Function

GO: NA

KEGG:

id description
K21109 MPP4; MAGUK p55 subfamily member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001350 True 1778 mRNA 0.54 17 26075570 26097013

Neighbor

gene id symbol gene type direction distance location
AMCG00001348 als2,LOC106574246 coding upstream 6060 26021981 ~ 26069510 (+)
AMCG00001338 NA coding upstream 349891 25718904 ~ 25725679 (+)
AMCG00001333 NA coding upstream 401803 25663865 ~ 25673767 (+)
AMCG00001335 NA coding upstream 439231 25630047 ~ 25636339 (+)
AMCG00001334 NA coding upstream 494194 25552444 ~ 25581376 (+)
AMCG00001349 NA coding downstream 3265 26100278 ~ 26117478 (+)
AMCG00001351 NA coding downstream 25830 26122843 ~ 26140826 (+)
AMCG00001352 NA coding downstream 90876 26187889 ~ 26189870 (+)
AMCG00001347 LOC103029249,LOC108423993 coding downstream 134273 26231286 ~ 26268997 (+)
AMCG00001353 NA coding downstream 187447 26284460 ~ 26290848 (+)
G130884 NA non-coding upstream 12877 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 345733 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 400088 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 441994 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 492964 25582342 ~ 25582606 (+)
G130948 NA non-coding downstream 199694 26296707 ~ 26335290 (+)
G131017 NA non-coding downstream 673867 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 696258 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 881762 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 326069 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 625260 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1469098 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1621185 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1629337 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 759586 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 807350 26904363 ~ 26954597 (+)

Expression


Co-expression Network