AMCG00001351


Basic Information

Item Value
gene id AMCG00001351
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26122843 ~ 26140826 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001351
ATGCAGGCCTCCAGACGAGCTTCAGGCATTCCCGGATTGACGCCCACAGAGGAGAAggATGGCAACCTGCCCGACATCGTGGACAGTGGCAGCCTGCACGAGTTCCTGGTCGGCCTGCATGAGAGATATGGGGCGGCTGCCTCCTTCTGGTTCGGGAGGCGCCCAGTGGTCAGTCTTGGGTCCATAGACCATCTCAAGCAACACATCAATCCCAATCGGACCTctgATCCCTTTGAAACGATGCTGAAGTCGTTGCTAGGATACCAGTCTGGGCTCGGTGGGGATGCTGCCGAGAACCTCATGCGCAAGAAGGTGTATGAGAGTGGAATCAGTAAGGCGCTGGAGCACAATTTCCCCCTCATCCTTAAGTTGGTGGATGAACTGGTGTCAAAGTGGGTTTCCGTCCCCGAGTCCCAGCACACACCCCTGTGCGCACACCTACTCGGCCTCGCCATGAAATCCGTCACCCAGATTGGCATGGGTAGCCGCTTCCAGGACGACCAAGAGGTGATCCGATTCCGCAAACACCACGATGGCGTCTGGTCAGAGATTGGGAAGGGCTACTTGGATGGGTCTCTGGAGAAAAGCCCAGCTAGGAAGAAGCACTACGAGGATGCCCTGTCAGAGATGGAGACAATACTGAAAACTGCAGCCaaggagaggaagggaaagagCTTCAGTCAGCATGCCTTCATTGACACGCTGCTTCAGCACAACCTCAGTGAGAAACAGGTAATGGAAGACAGCATGATTTTCACTCTGGCCGGCTCAATGATAACTGCTAATTtgtgCAGTTGGGCCCTGTATTTCCTGTCTACCTCAGAAGAAATCCAGGAGAAGCTCTGTGACGAGTTCAAAAGAGTCCTGGGAGACCAGCCCGTCACGTTGGACAAGATCGAGCAACTGAAGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07435 CYP20A; cytochrome P450 family 20 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001351 True 912 mRNA 0.54 8 26122843 26140826

Neighbor

gene id symbol gene type direction distance location
AMCG00001349 NA coding upstream 5365 26100278 ~ 26117478 (+)
AMCG00001350 NA coding upstream 25830 26075570 ~ 26097013 (+)
AMCG00001348 als2,LOC106574246 coding upstream 53333 26021981 ~ 26069510 (+)
AMCG00001338 NA coding upstream 397164 25718904 ~ 25725679 (+)
AMCG00001333 NA coding upstream 449076 25663865 ~ 25673767 (+)
AMCG00001352 NA coding downstream 47063 26187889 ~ 26189870 (+)
AMCG00001347 LOC103029249,LOC108423993 coding downstream 90460 26231286 ~ 26268997 (+)
AMCG00001353 NA coding downstream 143634 26284460 ~ 26290848 (+)
AMCG00001355 NA coding downstream 304255 26445081 ~ 26453330 (+)
AMCG00001356 NA coding downstream 340565 26481391 ~ 26488991 (+)
G130884 NA non-coding upstream 60150 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 393006 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 447361 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 489267 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 540237 25582342 ~ 25582606 (+)
G130948 NA non-coding downstream 155881 26296707 ~ 26335290 (+)
G131017 NA non-coding downstream 630054 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 652445 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 837949 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 373342 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 672533 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1516371 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1668458 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1676610 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 715773 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 763537 26904363 ~ 26954597 (+)

Expression


Co-expression Network