AMCG00001355


Basic Information

Item Value
gene id AMCG00001355
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26445081 ~ 26453330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001355
tatatatatatatatatataaatcctatCTAAAATAACTGCAATCTAGAAATAAACCCCTGCTTTTAAAAGGAGGGGTATCGTCATCACTGTCTGTTCGCTGCTGCTGTCAGTGCCTACTGAAATGCAGCTCTGTGGAGAATTTCGGTTTCCTGCCACAAGAAGGCTTTAAGGGTGAAGGACCTAGTTTATACATCAGTTCAGCAGTGCACAGCAGAAATGAAGCTTTATTCTCTCAGAGCGACCTGGCTGGCTATTGCCATTTGTTGTGCCTCAATAGGACTAGGCTGTCCAGCTCCTACTTTCCAGTTTTTGTCGGCTGCACTCAATGGCAGTGTCACGCTGGAGTGCAATTTCACGTCATCTATCCAGATGGACAGTGAAATAATTGTTACTCTTTCTGACCAAGCACAGAACGTGAAATGCAAATTGATATTAAAGACAAACGAGTCGTCCAAGTTCAGTGAAAACCATGATGGATGCCTTGTGAATCGCTCTGACAACAAAGTGGACTTTACACTGTTGTGGCTAAGAAAAGAGGACAGAGGCATGTACAGGTGCAATGTGGAGATCGTCTTCCCTCCACCCTACCAGAGGTTGAATGGAAGTGCCACGACAATGCTCATTGTGGAAGagaATGAATGCAAACAAGATTACCATTCAGATTCCTCCATGACCTGGCTGTCGGTGGTAACAGGCTGTGCTCTTCTCATGTACAGCACAGTGATGACCGTGATAGTGGCTATTTACTGTatcaaattcacaaaagaaaagaacacacaGAATGATTACATGAACATGAAACCCAGAGGACTGAAGAAGAATCAAGGTGTGATCCACCCCACCAGAAACGGCAGATACTGAGAAAAAACTTTTAAAGCTGGCTTATCTCAAACGGATCTTTAGTAGGTCACCTAAACTCTAATATAAGCAGGAAGGAAAATGTATGTGGTCTAATGTAAAAAACTGTTCTTAGTCACATCCCGCCACTATATacaatactgttttaaaatgcacctAGGAGCACCAAGCAGGTTAAGAAGATCTTCTGATTTTTCAGGATGAAAGACAAGGGTTTCACTCCTGCTTGGGTATCTATACTTACTGCTTTGCCATCTGATCATATTAAGTTCCTACTTTATTATAAGAACCTATCAGAAAGACAACAAAGTTGTCTTAGTTGCCAAGTCAATTGTAGCCACTTTTCTTTAATCTCTAATTATAAGATGTTTCCTTTTGTTGCATTCTTTCAAGCAAAAACACAGTTAGGTGGATCcctacatttttgtatttgccaaACAGtacagaaaggaaaatgtgttcagttttaaaatctgtatttaattattatattttggacAGATTGTTCAAACTGCTGGAGACTTGGGAGACTAGggactggattaaatcaaaactttgacccacccactaatagcaaactacaaagctgtacatctaagtagttacatttctgattagaagaaagtggcatctaactaaaaatgaagctgcaactgagtacagatctgtagttttctattagcaggtgaatcaatgctttgatttaatccagccatAGGTTTCTAGGGGGGATACTGGTACGTTGTGTGGTGGTGTAGATAATGTAAGGatcattatttttgtcagcattatgttttcattttctgctggttgttttgttattaatgtcATTTGTCTTGTAATACTTTCCAAAAGAGTTAAAcgtgtgtaatttgtaaatgcattcattttgtattaagGACTCGTTTCAGCAATGTCCCCTagtgattttgtttgtatgtgtataacTGTAACTGTACATACTTGTATTGCTAAGACATATTGAGCATAAATACAACTATTGATATGTATGCCTACAACTCTATCGCTCCTCTATTTGGGCTGGACTCCCAGAGTGAACAGAAGCAGGTGGGTAGACAGTACTGTTCGAAAGACACATGCAAGCGGTCAATGTCTCTGATATGTTATTTGGACTCAGGGAGCACAGTTGGTGAATGGATTAACAATCGGCAGTTTTTAATTTAGCCCCGGCGGTGTTTGTGACACTCCAGTGACTTGCGCTTCTCTTCCTGAGAGGGTGAGACTTGCATGGAAAAAGGGAAATGGATATTCGTTCTTTAGGtgtaaatcaaagaaaacagtAATATATTCTGCACAAGGAAGGATTTTACAATGTAACTCTGATGTCATGGCAGCTTAACTGTCTGTAGCAAATTAACGTTTCTGCCTTCCCCCACTGTAATTATCTTTCtatgtttatcttttttaatcAGTTGCCATGACATTAAATATGTCTTACTTCTATCAGC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001355 True 2329 mRNA 0.39 4 26445081 26453330

Neighbor

gene id symbol gene type direction distance location
AMCG00001353 NA coding upstream 154233 26284460 ~ 26290848 (+)
AMCG00001347 LOC103029249,LOC108423993 coding upstream 176084 26231286 ~ 26268997 (+)
AMCG00001352 NA coding upstream 255211 26187889 ~ 26189870 (+)
AMCG00001351 NA coding upstream 304255 26122843 ~ 26140826 (+)
AMCG00001349 NA coding upstream 327603 26100278 ~ 26117478 (+)
AMCG00001356 NA coding downstream 28061 26481391 ~ 26488991 (+)
AMCG00001357 NA coding downstream 58227 26511557 ~ 26519285 (+)
AMCG00001360 NA coding downstream 84622 26537952 ~ 26545509 (+)
AMCG00001363 NA coding downstream 383157 26836487 ~ 26838265 (+)
AMCG00001364 NA coding downstream 551315 27004645 ~ 27042352 (+)
G130948 NA non-coding upstream 109791 26296707 ~ 26335290 (+)
G130884 NA non-coding upstream 382388 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 715244 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 769599 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 811505 25633234 ~ 25633576 (+)
G131017 NA non-coding downstream 317550 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 339941 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 525445 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 695580 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 994771 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1838609 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1990696 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1998848 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 403269 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 451033 26904363 ~ 26954597 (+)

Expression


Co-expression Network