AMCG00001357


Basic Information

Item Value
gene id AMCG00001357
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26511557 ~ 26519285 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001357
CACAGctgcaaacaaagacaaaacaatcaGCCTAAGTTAAGTCAGACAACTTGGATCACTGAACATGCTGCCCAGACTGTTTCCTCTCTACCTCTGCCTTGCCCTTGTGAATGGTTCAGGAGCAGACTCAAATATTGCTGTTACCATGCGAGCCCAGCAGACCACAGgTCTCACAAAACATAGAAATTGGAAGATCACATCCACACACAAGTGCTCAGATTCCTCCACGCCCAAACCATAAGAAGAAAAGAAGACGGGGTGATGAAAGCAATGGCGATTATATGGACATGAGGCAAGTGCCCAAATCAAGGGATAAGAACTTTAATTCCCAGCAGATCCATTActgatattttctttgtattttttttttccaatttatatgtattaatgcTTAATACTTGTTAATAtaccatgttttgttttctatttcttaAAGATGGCTTACATATAATTACTGcttaaagcaatgttttacTTTACAATCTTTGGTATGTCATgcttgtttgtaatttgtgctAAAAGGAGCCACATTTGGAACTTTTACCTTTGTAAAGTTATTTGTATTCTACATTGGAATGTATATTTTTGCCATATTTAACATTGCTTCATTAGAAAGGGGAAATTTAATCCCCTGCCTTTGGAGAGCACTTCATCACAAAACACTTCATGGATAGATGTCCTTCAGCACAGAAGAGAAAACAGTGCCGCCTCCTGGTTCAACAATGACACTTTAGGATGCAAGCTGAGGTTTGCCAAATGTTAACCCGGCCCAGCTGGGTGCCTTGTCTTATTTCTGAGATCTGATAAGATGTGGTTTTAACAAAGTATTATTTCTCTAAGGTGTGCAagaatacaaatgtgtaaaaaaggAATGTATAAGTGCCACAAAGAAAGgtactgagttttttttttttttttttttttttttttttttttat

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001357 True 938 mRNA 0.37 5 26511557 26519285

Neighbor

gene id symbol gene type direction distance location
AMCG00001356 NA coding upstream 22566 26481391 ~ 26488991 (+)
AMCG00001355 NA coding upstream 58227 26445081 ~ 26453330 (+)
AMCG00001353 NA coding upstream 220709 26284460 ~ 26290848 (+)
AMCG00001347 LOC103029249,LOC108423993 coding upstream 242560 26231286 ~ 26268997 (+)
AMCG00001352 NA coding upstream 321687 26187889 ~ 26189870 (+)
AMCG00001360 NA coding downstream 18667 26537952 ~ 26545509 (+)
AMCG00001363 NA coding downstream 317202 26836487 ~ 26838265 (+)
AMCG00001364 NA coding downstream 485360 27004645 ~ 27042352 (+)
G130948 NA non-coding upstream 176267 26296707 ~ 26335290 (+)
G130884 NA non-coding upstream 448864 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 781720 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 836075 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 877981 25633234 ~ 25633576 (+)
G131017 NA non-coding downstream 251595 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 273986 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 459490 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 762056 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 1061247 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1905085 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 2057172 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 2065324 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 337314 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 385078 26904363 ~ 26954597 (+)

Expression


Co-expression Network