AMCG00001361


Basic Information

Item Value
gene id AMCG00001361
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26856599 ~ 26880797 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001361
ACAAGTACATACACAGTGAAATCATCACAATATCTGGGTGATATTCTGATGATCATCCTGCAGAAGAAGCAATTTATGAACCTATCAAATACCAGCTGGTTCTGCACTGAGGTGGTTGtgaaagatgaaaatgaaaaaacataccACTTCCCCTGTTACTGTTGGATCACAGGCTCTTACCCTGTCAGTGTGAGAGAAGGAacagCAAAGAAGAGACATGAGGACAAGCTTCCTAAAAACACGAAGGATCAGATGGAGAACCGCAGGGCCTTATTCATGTGGAAAACATTCATTGACGAAATACCCAAATGTATTGATGGCAATGAAGCTACTGACTTGAATCAGAAGCCTGGCCCAGACAACCCAATATTTTATCCTGATGACTCTAAAGAGGACTGGACTCTAGCGAAGATCTATGTGCGCAGTGCCGACTTTAACTACTATGAGCTGGTTACTCATCTGCTAAGGACTCATCTTCTTGCCGAGGTGTTCTGTGTTGCACTGCTCAGACAGCTACCCTCCATCCATCCTCTGTTCAAGCTTCTGGTTCCACACATGCGATTCACACTGCAAATCAATATACTGGCAAGGAATAAGTTGTTGAACAAAGGTGGAGTTTTTGACCAGTGTTTCAGTTCAGGAGGGTCTGCAAAGGGCATAATTCTCCAGAGAGGCCTTAAGGAGCTTACCTAcagctctctctgtctgcctgaaGACATTGCAATGCGGGGAGTGGACACTTTGCCTAACTATTACTACAGGGACGATGGCCTTAAAGTTTGGAAAATTACTGAAAGGTTTGTGCAGAAAATGGTGAATTTCTATTACCCAAACGACCATAACGTCGGGGAGGACACAGAACTCCAGAACTGGATAAAGGATGTCAATTTTGGCTTACTAGACTGCCCAACATCTGGTATGCCAGCTTCACTTAACACTGCCAAAGAACTTATCAAGTTCCTCACCATGGTAATTTTCACCTGCTCAGCACAGCACAATGCAGTCAACTATGCACAGTTTGAATATTGTTCCTGGATGCCCAATGCCTCACCAACTATGCGCCAGCCTCCGCCCTCTATGAAAGGGGTCACCACTGAGGACGACATCCTGGAGAGCATTGCTAATGTCAGTAACACCATTTATACCAACACTACAATCTGGTTGCTGACCCACAAATCTACAGACTTTGTCCGTTTAGGAACATACCCAGATAAGCGCTTCACTGAGAACAAACCCCAGCAAATAATGAAAGAATTCCTGGAGGACCTGATGCAGCTTGACACTGAAATCGAAAAACGCAACAAGAGCCTTGAGATTCCATACCTCTACATGAAGCCAAGCAACATTGAAAACAGCATTTCCATTTga
>TU164194
GGAAACTAGTTACAGCTGTACAAGAATCTGATTCAGCACCTGCTTCTTTTcttgaataaactgaaaataataataatggttacATACAAAGTGACAGTAACTACTGGTGATTTCCTTTATTGTGACACATATGATGATGTCTATATAACTTTATGTGGAGCAGAAggcaaaagcaaaaaagaacACCTGGTCAATTGTGGAAGGAATTTTGCAACAGGCCAAACAAGTACATACACAGTGAAATCATCACAATATCTGGGTGATATTCTGATGATCATCCTGCAGAAGAAGCAATTTATGAACCTATCAAATACCAGCTGGTTCTGCACTGAGGTGGTTGtgaaagatgaaaatgaaaaaacataccACTTCCCCTGTTACTGTTGGATCACAGGCTCTTACCCTGTCAGTGTGAGAGAAGGAacagCAAAGAAGAGACATGAGGACAAGCTTCCTAAAAACACGAAGGATCAGATGGAGAACCGCAGGGCCTTATTCATTTTCAGGATAAATAAATTTTATGGCCTTTCTGAATGTCATGACTCATGGTCGAGTATGAAGAATATGAAAAAAGTCCTCAAATTCAAGTCAACTAATAATG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001361 True 1368 mRNA 0.44 10 26859094 26880797
TU164194 False 601 TUCP 0.38 4 26856599 26863132

Neighbor

gene id symbol gene type direction distance location
AMCG00001363 NA coding upstream 18334 26836487 ~ 26838265 (+)
AMCG00001360 NA coding upstream 311090 26537952 ~ 26545509 (+)
AMCG00001357 NA coding upstream 337314 26511557 ~ 26519285 (+)
AMCG00001356 NA coding upstream 367608 26481391 ~ 26488991 (+)
AMCG00001355 NA coding upstream 403269 26445081 ~ 26453330 (+)
AMCG00001364 NA coding downstream 123848 27004645 ~ 27042352 (+)
G131021 NA non-coding upstream 63046 26793271 ~ 26793553 (+)
G131017 NA non-coding upstream 85438 26770880 ~ 26771161 (+)
G130948 NA non-coding upstream 521309 26296707 ~ 26335290 (+)
G130884 NA non-coding upstream 793906 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 1126762 25727853 ~ 25729837 (+)
G131072 NA non-coding downstream 97978 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 1107098 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 1406289 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 2250127 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 2402214 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 2410366 24424565 ~ 24446233 (+)
AMCG00001365 NA other downstream 23566 26904363 ~ 26954597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019613 si:dkey-17e16.9 coding NC_007132.7 CM002905.2 25544882 ~ 25555355 (-)