G125515


Basic Information

Item Value
gene id G125515
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 121280 ~ 127663 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157307
GTGACCGTGtactgagactctgctctgtccTATCTGCACACAGAATCTTCCGTCACAGCAAGAGACCCAGACCGCAGCATCCGAGCAGCCCGTAGAGGACGAGGATCCTGGACAGGACGGCTCTGAGCATCACCCCGCAGatgcTGCGGAGGTGCCGAGCCAGGCCAGACTGTCCAGGTGGAAACGCCTCTCCAACTTCTTCCTCCGCCTGTGTTGCTGCAGGGCGGATGTGAGGGAGTAATGCCAGGAAGTATCCCCtagcgtgtgcgtgtgcgtgcgtctTAGAGAATACTATGTagtatataagtTTCAGCatctctgtatatattaaatactatatactgagacgcatataatatatactgagatgctgagacttGTACAATATACTACATACCGAGGcgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgaaACTTGTACAGTATACTACATACCGAGatgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatATATGCTGAGACTtgtacagtaagggaaaaaagtatttgatctcctgctgattttgtacatttgcccactgacaaagaaatgatcagtatCATTTTAagggtaggtgtattttaacagtgagagacagaataacaacaaacaaatccagaaaaaaacgcatttaaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatccccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggactctcctaatctcagctccttacctgtataaaaaacacctgtccacagaagcaatcaatcagattccaaagaTGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgagacttgcatactatatactgagacgcatataATATATAGTGAGATGCTGAGACTACATGCAGTTAAAAGGGATGCCAAATGGCTAAACTCGACTCTTGAAACAGAGAAGGTCGTTAAGAGGCTTCTGGAGATGCCTGAGCTCAGACCCCCAACCCAACAGAGCCACTTAAACTCCTCTTGAGGAGACCTAGGAGTAATAAAATGACTGATATATGCAATAAGCTCACAGCATTTTACACAATTCATTAAGCAgtgtgaaatatgaatatattgcaGACCCTATTTCTGTtgctttgtatgttttgttacaactggatatagaaaatacataaagcatttcgcaaatttcaacatttgtagCGAAATAGTCAAATCTATCGCATCGATATAATGTCATGTATTGCAGTGcactgtgcatgtttcaacaCCATTGTGCATTACTGAGATGCAGACAATGAGTCTTATACCCTCAGGACTCTTGTCTTGTGGAAGGACCGTGTAAAGTGTTTGGTGAAGCAAGTTCTTAATAAAACGTTCAAATATT
>TU157308
GCGCCGGACATGAGGTGGTGCGGACGCCTCTTCCTGCGAGGGTCTTCTGGACAGAGAAGGACCCTAATCTTCCGTCACAGCAAGAGACCCAGACCGCAGCATCCGAGCAGCCCGTAGAGGACGAGGATCCTGGACAGGACGGCTCTGAGCATCACCCCGCAGatgcTGCGGAGGTGCCGAGCCAGGCCAGACTGTCCAGGTGGAAACGCCTCTCCAACTTCTTCCTCCGCCTGTGTTGCTGCAGGGCGGATGTGAGGGAGTAATGCCAGGAAGTATCCCCtagcgtgtgcgtgtgcgtgcgtctTAGAGAATACTATGTagtatataagtTTCAGCatctctgtatatattaaatactatatactgagacgcatataatatatactgagatgctgagacttGTACAATATACTACATACCGAGGcgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgaaACTTGTACAGTATACTACATACCGAGatgcatataatatatactgagatgctgagacCCATACAATATATGCTGAgatttatatactatatactgagacgcatacaatATATGCTGAGACTtgtacagtaagggaaaaaagtatttgatctcctgctgattttgtacatttgcccactgacaaagaaatgatcagtatCATTTTAagggtaggtgtattttaacagtgagagacagaataacaacaaacaaatccagaaaaaaacgcatttaaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatccccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggactctcctaatctcagctccttacctgtataaaaaacacctgtccacagaagcaatcaatcagattccaaagaTGCTGAgatttatatactatatactgagacgcatacaatatatactgagatgctgagacttgcatactatatactgagacgcatataATATATAGTGAGATGCTGAGACTACATGCAGTTAAAAGGGATGCCAAATGGCTAAACTCGACTCTTGAAACAGAGAAGGTCGTTAAGAGGCTTCTGGAGATGCCTGAGCTCAGACCCCCAACCCAACAGAGCCACTTAAACTCCTCTTGAGGAGACCTAGGAGTAATAAAATGACTGATATATGCAATAAGCTCACAGCATTTTACACAATTCATTAAGCAgtgtgaaatatgaatatattgcaGACCCTATTTCTGTtgctttgtatgttttgttacaactggatatagaaaatacataaagcatttcgcaaatttcaacatttgtagCGAAATAGTCAAATCTATCGCATCGATATAATGTCATGTATTGCAGTGcactgtgcatgtttcaacaCCATTGTGCATTACTGAGATGCAGACAATGAGTCTTATACCCTCAGGACTCTTGTCTTGTGGAAGGACCGTGTAAAGTGTTTGGTGAAGCAAGTTCTTAATAAAACGTTCAAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157307 False 1582 lncRNA 0.40 5 121280 124274
TU157308 True 1604 lncRNA 0.41 6 121280 127663

Neighbor

gene id symbol gene type direction distance location
AMCG00000686 pofut2,LOC107741944,LOC107660604,LOC107565035,LOC107714363 coding downstream 1382 112162 ~ 119898 (-)
AMCG00000684 NA coding downstream 10756 100069 ~ 110524 (-)
AMCG00000685 NA coding downstream 31035 87659 ~ 90245 (-)
AMCG00000682 ramp1 coding downstream 44944 66652 ~ 76336 (-)
AMCG00000689 NA coding upstream 3970 131633 ~ 142509 (-)
AMCG00000688 unc80 coding upstream 18116 145779 ~ 192328 (-)
AMCG00000690 NA coding upstream 179818 307481 ~ 329049 (-)
AMCG00000692 acadl coding upstream 204560 332223 ~ 338261 (-)
AMCG00000693 NA coding upstream 212070 339733 ~ 348410 (-)
G125498 NA non-coding downstream 28625 92283 ~ 92655 (-)
G125497 NA non-coding downstream 29995 91051 ~ 91285 (-)
G125578 NA non-coding upstream 248157 375820 ~ 376770 (-)
G125591 NA non-coding upstream 281952 409615 ~ 410817 (-)
G125622 NA non-coding upstream 395858 523521 ~ 527501 (-)
G125625 NA non-coding upstream 470321 597984 ~ 598335 (-)
G125642 NA non-coding upstream 759491 887154 ~ 887476 (-)
AMCG00000687 map2 other upstream 66981 194644 ~ 244177 (-)
AMCG00000710 myo1b other upstream 1180158 1307821 ~ 1312408 (-)
G125814 NA other upstream 1259180 1386843 ~ 1422410 (-)
AMCG00000719 NA other upstream 1351077 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 1634366 1762029 ~ 1771025 (-)

Expression


Co-expression Network