G125622


Basic Information

Item Value
gene id G125622
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 523521 ~ 527501 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157449
CTGTCTCTCTTCCCCGCCATGAAGGAACTTTAATGCCATTTAATGGATGTATGCCTTGAAAATAGAGAGAATTGGGACCGCCCTGCCCCACCGGGAGAGAGCAGTGTTGACAGAACCAGATTTGGGGCCGTGAAACACGAGCCTCTCGGACCTGAGGGAGAATGGCACATCCAGCCGGGAGTCTGGTCTGTGGTCAGCTGACTCGGAGAAGGCAGAGACGTTACCACTGCGCTGTGTGCGATCGTGGGGGGGTGGTCCCACAGGCGGCCCTTGAAGGAGTTGTAAACTATGTAGCAAACACTGATCCAGTGTCCAGTGGGCTGTGTTTCATTCAAACCTAAATAACATTGAAGCAGCTATTGAGGAACAACTTGACCAAGACCTGCATTCACcattgggggcgggggggggatttaataaataaatatgtgcagtATTGATCTATCAGCAGCCGCCTTTATCGATGCGCTGCTGGACGAAGCCCCTCCGAGGTGTTTCTGAGCCGCATCTCTTTCGGAGCTCCTGGTTTCATCCCCCCGTCCTATCTTTCTCCTCGGTCTTTATTCGTCTCTTGGGATGCGTTCTGTAGCTGCTCGTGTCCATCTCTGGACGGTCCTCCTGGCCTTGTGTCCGAATCACTGGCATTTTAACACATTCACCCTTTCGGTGATGTCACACACTTtagtttgttctctgatccattgATTTGTGCGTTTGTCTCTTCCTGTtactcccagcatgcattttTCTGTGCTTCTTGGTGTCATTTGCAGTTTCCATATTATATTTGCTTTTAGTTACCAggagatatagatatagatggaTATATATGGAGATGTATACAAACTGGACGGTGGTGCAGACTTGCTAATAAGAGGAGTCCATCGTGATCTCGTCTGTTCCGGCTCTGTCCTCCTccgtgtctcagtgtgtgttgGAGAAAATCAGATCATTGATCCCAATCAGGGCTCATCAGCCCAGAGAGCGCGGACCCTTACTGGATCGGTCGTGACGCATATCTGTGATCTCAGCACATGCTTTTCTAAGACACTATTGACAACAGAAAGACGGGAGTTGATTTGTGTCAATACAATGGACTGTTGGTGTTGTGTCCCGGAGCTCTTGTGAGCCATGGCTTCCTGCCTGACTGTTAGGGGCTGGGGGGGTGATGAGATGAGACTTATTGTGCGTTGTGTCCAGTGCGCATGAGCAGTGTTGTGACCGGATCTGATTCCAGGTCCGTAAAAACAGACAAGCAGAACTGTGACTTGTGAGGACTTTCACTTAACTGCAGCTttgatctctctccctctctttctccctctctctgtctctctcctccctctgctCAAGTCAAGCCGTTTATTCTCAGTCACAGCCCAGTTCTGACTCACAGCCCCCCGTTCACTCGTCTGTCAAACAACCGCTAACGACACACAAAGCCCATTAACACCGAGGCCCGTGAGCGACAGCCGGGCGACGGCCTGATCGCAGGTGACTCTGGCGCTGGTTCTGTGTAATTGGGTTCCGCGCTCTCGCCTCGAGCCCGCGGGTGTTTTAAAGTCCCTGAGCTCGGCACGGGATGGTGCGTGGCCCCTCAGAGACGGGGCCCGGAACGTTTCTCATGCTGTTAAACACACCGACGTAACTATTTTTATTCGGGGCCCCAGACCCCTCAGAACcctcagtttaattaaaaatacggTGATATATCAGAACaactgtaatataataataataataataataataataatatcggAGCTGGGCTGTGTGTGAGAGGATTGGCTTCCTTGCAGGATCcctctttgtctgtctctcttcctctccctctgctcactccttctctctctccctctctttgtgTCCTTTGCCTGTGCATACGGATCAGTCTAATGAACCCAGGTAGGCAGACGGGGAACTGAAGGCAGCTGAAGTTGATTAATCTCGTTTTGTCACAATGGCCTCTTCGCTTTCCTCTCCAGCCGACACTCCTTCGTGTGGCCGAGAGTCGCCCCCAGTCCTCCGCCCGTCGCGTCGCTCTGTCTGTGCGTCTCCGCCGCGTCTTCATTCGGCGTCTCGTGTCTCACCTTCTCTTCTCTGTATCTTTAAGACACGCTTTACTGATTTctcttatacatttttatcttATAAATAAACTATAGACACATAAAGTGCAACGTGGTTTGCTTTAGccattttttggttgttgttgttccagATGTGTACTGCTTGCATTGTATTTAGTATCGTCACTTTTCCTCATGTTTAATGACCTTAGTGCACAGACGCTATTACAGTATCCCATGTGAGTATCATATATATTGtggttatgattattattatcattattattattattattattaacacactgATGTACACGGAGGAAGCACACAcgttttctctcttctctcttcttttgTGGTTTTATAAACAGAAGTTTGGAATAGTTGTTCCTCAAGATTTACTACTGTATGCTATCTGACAAATGTGAATAGTATTTTTATAGACTGCTGATGAACAGGCCAGGTGCGTTTGTAAATACGGGGAAAATGTTACTCTGGGTTTACGTTCTGTTTTCTCACCACAGAGTTGGTTTCTGTTGAACATACTTGTCTGTTTGGGATTTGATTGCCTCTGTATATACGCTGCTCTTCAGattgtgactttttttatttgaagcgCTCATGAATTTAGACATTTGACTTGTGATCCATGTTTAGCACAACTTGTGACCGTGTTTTACCTTCTGCACTCGCTCTCGTGGTAGGAGCTGCTCTGACTGTCTGTTGTCGCTTCCCTCTCATCTCCTCCCGTGACCCCCGCTGTAGCGTGTACTGAGACACTGTTGCAATACCGAGGACTGTACCGAGTCccgtctctttctctctggttCTCCTTCGCTCTCGGGAGCAGCGCGGGGCTGCCAGGGTCCTAGTTGCCTCAATTCTGAAATCACTCAGTGAACCGTCGAGTGGCTAAATTGAGCATCGTTTCCACTGCAGGGTTTACAGGGCTGACTGTGGCCCCCCGTGCCCCCCGTGCCCCCCTCTGCTCCCGAGAGCTGTTCCTGGAAAGGATCTGTCCTGAATTGAGTTCTTCCTTTACGCCCCCGTGTTtggtttctctctccctctttctaaTTGGTGCAGCTGGGCTTCGTTGCTGTGAGCCCCTCCCAGGTCTGACCTGTGGGTACGAGTGCCAACTGCAGGACTGACGGCAGCAGGAAGCACCTACCAGTGTTGCCAACACTCGAGAACCTCCCCAAACCCACCCCAGTCCCAAGGTCACCTGGCCAGCCCTCCTGCGTTGTTCATAGGGGCGAACATTTATGTTGATAGAAGTCTAGGGGAACCTAATTCAAGGCGATTGACGCCTGCAGATCATCTCTCCACTATGCGAGTGAGTGCCGAGGAGGAAACGTTGGGTGTGGGGGTCTCGGAGGTGACAGAGAGTGGCCCCTGACCCCAGAGTCTGTGAGGGGGATGTGGGATGAGGGCCTCGGGACACTGGGGTGGAAAGATGTGTAACTCACTCTAATTAAAATGCGATACTGTACAGTTATCGTACATTGCTgttactgacacacacacacagatgtgtgTCTAACGAAAGCCCCATCCCCCTCTGGCACTGAGAGAAGTGTTGGGTCGCGGTTCACTTTGGGCACGAGAGCGTCTGTGGAAAACAAGACGCCGCCTCCACTATTTGAACACGTTTGAATATATAACTACCTGAATAAACCCCGTCCCGTTTCCTCCTCTCCAGCGATCATGGCGCCTGAATCCTCAGTGACGTAATTAAGGTTTTTGGTTTTGCCAGCGTTTGTAATTCTGCCCAGATCTGCCGAGGTCAGCGTCCcaaatcccccccacccccggcaACACTGGTACctgttttctctttcagtgGACATTTGATCCCCCCTTAAGGCTCTAGCATTTAAATACTGTTCCGCATTTTTGTTACATGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157449 True 3981 lncRNA 0.49 1 523521 527501

Neighbor

gene id symbol gene type direction distance location
AMCG00000691 NA coding downstream 157405 354488 ~ 366116 (-)
AMCG00000693 NA coding downstream 175111 339733 ~ 348410 (-)
AMCG00000692 acadl coding downstream 185260 332223 ~ 338261 (-)
AMCG00000690 NA coding downstream 194472 307481 ~ 329049 (-)
AMCG00000688 unc80 coding downstream 331193 145779 ~ 192328 (-)
AMCG00000696 erbb4,LOC107741926,LOC107555909,LOC107660610,LOC107662043,LOC107721020 coding upstream 3540 531041 ~ 536858 (-)
AMCG00000697 NA coding upstream 14555 542056 ~ 544156 (-)
AMCG00000700 LOC108441681,LOC108440448 coding upstream 63344 590845 ~ 612323 (-)
AMCG00000698 erbb4 coding upstream 116112 643613 ~ 647413 (-)
AMCG00000699 NA coding upstream 151513 679014 ~ 680483 (-)
G125591 NA non-coding downstream 112704 409615 ~ 410817 (-)
G125578 NA non-coding downstream 146751 375820 ~ 376770 (-)
G125515 NA non-coding downstream 395858 121280 ~ 127663 (-)
G125498 NA non-coding downstream 430866 92283 ~ 92655 (-)
G125497 NA non-coding downstream 432236 91051 ~ 91285 (-)
G125625 NA non-coding upstream 70483 597984 ~ 598335 (-)
G125642 NA non-coding upstream 359653 887154 ~ 887476 (-)
G125685 NA non-coding upstream 741730 1269231 ~ 1307353 (-)
G125712 NA non-coding upstream 792033 1319534 ~ 1319813 (-)
G125719 NA non-coding upstream 796002 1323503 ~ 1328648 (-)
AMCG00000687 map2 other downstream 279344 194644 ~ 244177 (-)
AMCG00000710 myo1b other upstream 780320 1307821 ~ 1312408 (-)
G125814 NA other upstream 859342 1386843 ~ 1422410 (-)
AMCG00000719 NA other upstream 951239 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 1234528 1762029 ~ 1771025 (-)
AMCG00000741 gtf3c3,LOC104966512 other upstream 1302043 1829544 ~ 1831310 (-)

Expression


Co-expression Network