G125684 (myo1b)


Basic Information

Item Value
gene id G125684
gene name myo1b
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1304095 ~ 1307335 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157522
AGGGCTCTGCCGCAGCCGCCAAGGGAGACTTCCTGCTGAGCAGCGAGCGCCTGATCGAGATCGTCACCAAGCTGCACCGCACCGCTGCCAGCACCGCCGGCCGAAGCCAGATCAGAGTGGACATCACCGACGAGTTCCTGGTCCAATTCAAGCAGGACAAGGTGTGCGTGAAGTTCGTCCCAGGCGGGCCCAGGAACGGCAACAGCGCCACCTGCAAGCGCAAGAACAACCGCCTGCTGGAGGTGTCCGTGCCGTCTCCATAGAGGGCCGCGCCGCGCCGGACTGTCCTCCTGACTGTgcaatcttttgttttttttttcttattattttaaatatttttatctCCATGTGCGCTGTCACACCACGACGACGAAGACGACACGAATCTGTGACTCAGTGACGAGACAAGAATGCCTTTTGGAagcatacgtgtgtgtgtgtatatatatatatatatatatatatatatatatatagatgtacaATCAGAATGTCTACGAAAGCGGAGGGATGGATGCTGGTGTGGTTCTGTACGATGTTTTAAACTTTCTTGTAGTGGCGAGAGTGAGTAGAGTGAGTTTccattgatgatgatgatgatgataacatGGTCTGTTCGCTCTCAGTCCTGGTGCTGCCGGGCCCCAGGCTGGGGGCCACAGCCTGCTGAGAGTACTGTGGGTACTGTGTGACGCAGCCGCCAGGACGGGGGTGTCGGAGGGGGTACTGGAGTCAAGTGAAGCCGTGGGAGTTTGTGAGGGGCTGGACTGGGCTCTCTTGCtgttcgtttttgtttttgtttgggggaGAGGTGTGATTTGCTTTGTGTACacaccacacacgcacacatacagacagacacacacacacagacagacacacacacacagacagacacagacacacgcacacacacacacacacacgcacacagacacacgcacacacacgcacacacacgcacacacacacacacacacagacagacacagacacacgcacacacacacgcacacgcacacagacacacacacgcacacagacacacacacgcacacagacacgcgcacacagacacgcacacagacacgcacacagacacgcacacagacagacacacacacagacacacacacagacacacacacacacacacacacagacacacacacacacacacacacacacagtcttacATTCGAAGCTCACTCGCTCACCCCACACCTGTACACCAGTGAGGAGCAGGCAGGCTGCCGTGTGTCGTGCTGTCGGACCGTGTGTGTCGGGGCTGTCCTCCACTGAGAGCCTCTCGAGCCTAAAGCCAAATTTTGAATACTCGCCCTCTTCATCTCTCCGGACGGAGTGAATGCCAAAACACGGGGCTCTTTCCGAACAGGAGCCCCGTCCGGACGGACCCCATCCCAGACCGTGATCTGCGGCGGTGGTAGAGTCGAGCACATTTCCGTTCACTTTCCCAGCCCCCGTTTGTAGTGCAGGATTTGTTTCCGTGCTCAGTCCTCATCAGCCGATTCCCGTCTCCCAGTCCCTTCTCTCTGGCCGGCGAGCGGCTCTGAGCAACACAGAGACGCACGTTACACAACAATAGACAAACCTGAGTCctgaattctgtattttttggacaggggaggtggaggggggatTTGTTATCGTTATTCTTATCGATTATAATTTCAAGAATGTCCTGGGATCCCTAAACACGGTGGTAGGGGTCTCAGCCCCAGTGTGTCAGCTGCTTGCCGGCATTTTTCGGAGCCGCACCCCTTCCCAGATCCCCCTGCCCCGTGTCACGGACTGTCCCTCAGgctttctgctttattttgcttattgGTTTGAATGCCAAACCTGTTCTCTATCCCTGCCTGACTGGTGTGTCCTCAGGGCCTGCTGGTTTCTTTGGGCGAGTCCCCAGTTTGGCACATCGCTGTCCTGATCCAGCAGAGAAGTGAGGCCTGAATCCACTCTGTCATCGAGGGGAAGTTGCTCCTGAAGCCGGCAGCTTCTCTGTCATGCTCGGCTCGCGTGGAAGAGTTGGGATCTGCACAGGATGACCCATTGGATATGACCGGAGGAGCCTGCGGCAAGATCATCCTCTCTCCTCGTGCACGCAGTGCCGTGCGTAGGTCTGGCCGTTGATGATTGGATCAAATGGAACCAGGTTTGTCCGCGTTCTCTGGACTGCAGTTCTGTCCACATTCAAACGCTCTCCCTCAGACCAGAGCCGAGACCTCCTGGCCGACCATCGTGCACAGACGAGAGCCCGGCGTCCGGGAACCCAGACCAACTGCGTTCAGAGGTTTCTTCTGTTGTTGATAATCCTTTCTCtgtttgttcaatttaaatttaaatgtaatcaatgcACAATTATCTCACATAAGCCAATGTCAGTAATCAAAAAAAGTGGGTATTTTACATTGAAGTCTATTTAGAATGCAACTTTCTCTGTTCcgtatttttcatgttttcccGTGTGGAGGAAAACCAGGTTTCCAAATTGTGTTTGTGcaagaaaaactgcaaaaaacaacaaaaaaaacagcattgatCACCTGCTTGCTTGTGCTGGCGTTCCTCTTTGACGCGTGTTGTGAATCCAACTCGCGCCGCGGCCGCGGGGAGAGCCGCTGTGTGGGGGAGGCGGTGCCGCCCTGCTTTGGCGTGATTTTGGCTTCTATAGCCCTTCTCTGTGAGTGTATTTAAGACGAATACAAAAAagagcaaacagaaaaaaaaaaaaaaagaacattgttGTATGCATTCTTGTTTTGTGCCTGATGTAACCTGTACCACCAAGCAGATAACATTAACGCGTTCAGTAGAACTCAGTGTAACAAATCgcaattaatctttttttttttttataaatta
>TU157523
AGGGCTCTGCCGCAGCCGCCAAGGGAGACTTCCTGCTGAGCAGCGAGCGCCTGATCGAGATCGTCACCAAGCTGCACCGCACCGCTGCCAGCACCGCCGGCCGAAGCCAGATCAGAGTGGACATCACCGACGAGTTCCTGGTCCAATTCAAGCAGGACAAGGTGTGCGTGAAGTTCGTCCCAGGCGGGCCCAGGAACGGCAACAGCGCCACCTGCAAGCGCAAGAACAACCGCCTGCTGGAGGTGTCCGTGCCGTCTCCATAGAGGGCCGCGCCGCGCCGGACTGTCCTCCTGACTGTgcaatcttttgttttttttttcttattattttaaatatttttatctCCATGTGCGCTGTCACACCACGACGACGAAGACGACACGAATCTGTGACTCAGTGACGAGACAAGAATGCCTTTTGGAagcatacgtgtgtgtgtgtatatatatatatatatatatatatatatatatatagatgtacaATCAGAATGTCTACGAAAGCGGAGGGATGGATGCTGGTGTGGTTCTGTACGATGTTTTAAACTTTCTTGTAGTGGCGAGAGTGAGTAGAGTGAGTTTccattgatgatgatgatgatgataacatGGTCTGTTCGCTCTCAGTCCTGGTGCTGCCGGGCCCCAGGCTGGGGGCCACAGCCTGCTGAGAGTACTGTGGGTACTGTGTGACGCAGCCGCCAGGACGGGGGTGTCGGAGGGGGTACTGGAGTCAAGTGAAGCCGTGGGAGTTTGTGAGGGGCTGGACTGGGCTCTCTTGCtgttcgtttttgtttttgtttgggggaGAGGTGTGATTTGCTTTGTGTACacaccacacacgcacacatacagacagacacacacacacagacagacacacacacacagacagacacagacacacgcacacacacacacacacacgcacacagacacacgcacacacacgcacacagtcttacATTCGAAGCTCACTCGCTCACCCCACACCTGTACACCAGTGAGGAGCAGGCAGGCTGCCGTGTGTCGTGCTGTCGGACCGTGTGTGTCGGGGCTGTCCTCCACTGAGAGCCTCTCGAGCCTAAAGCCAAATTTTGAATACTCGCCCTCTTCATCTCTCCGGACGGAGTGAATGCCAAAACACGGGGCTCTTTCCGAACAGGAGCCCCGTCCGGACGGACCCCATCCCAGACCGTGATCTGCGGCGGTGGTAGAGTCGAGCACATTTCCGTTCACTTTCCCAGCCCCCGTTTGTAGTGCAGGATTTGTTTCCGTGCTCAGTCCTCATCAGCCGATTCCCGTCTCCCAGTCCCTTCTCTCTGGCCGGCGAGCGGCTCTGAGCAACACAGAGACGCACGTTACACAACAATAGACAAACCTGAGTCctgaattctgtattttttggacaggggaggtggaggggggatTTGTTATCGTTATTCTTATCGATTATAATTTCAAGAATGTCCTGGGATCCCTAAACACGGTGGTAGGGGTCTCAGCCCCAGTGTGTCAGCTGCTTGCCGGCATTTTTCGGAGCCGCACCCCTTCCCAGATCCCCCTGCCCCGTGTCACGGACTGTCCCTCAGgctttctgctttattttgcttattgGTTTGAATGCCAAACCTGTTCTCTATCCCTGCCTGACTGGTGTGTCCTCAGGGCCTGCTGGTTTCTTTGGGCGAGTCCCCAGTTTGGCACATCGCTGTCCTGATCCAGCAGAGAAGTGAGGCCTGAATCCACTCTGTCATCGAGGGGAAGTTGCTCCTGAAGCCGGCAGCTTCTCTGTCATGCTCGGCTCGCGTGGAAGAGTTGGGATCTGCACAGGATGACCCATTGGATATGACCGGAGGAGCCTGCGGCAAGATCATCCTCTCTCCTCGTGCACGCAGTGCCGTGCGTAGGTCTGGCCGTTGATGATTGGATCAAATGGAACCAGGTTTGTCCGCGTTCTCTGGACTGCAGTTCTGTCCACATTCAAACGCTCTCCCTCAGACCAGAGCCGAGACCTCCTGGCCGACCATCGTGCACAGACGAGAGCCCGGCGTCCGGGAACCCAGACCAACTGCGTTCAGAGGTTTCTTCTGTTGTTGATAATCCTTTCTCtgtttgttcaatttaaatttaaatgtaatcaatgcACAATTATCTCACATAAGCCAATGTCAGTAATCAAAAAAAGTGGGTATTTTACATTGAAGTCTATTTAGAATGCAACTTTCTCTGTTCcgtatttttcatgttttcccGTGTGGAGGAAAACCAGGTTTCCAAATTGTGTTTGTGcaagaaaaactgcaaaaaacaacaaaaaaaacagcattgatCACCTGCTTGCTTGTGCTGGCGTTCCTCTTTGACGCGTGTTGTGAATCCAACTCGCGCCGCGGCCGCGGGGAGAGCCGCTGTGTGGGGGAGGCGGTGCCGCCCTGCTTTGGCGTGATTTTGGCTTCTATAGCCCTTCTCTGTGAGTGTATTTAAGACGAATACAAAAAagagcaaacagaaaaaaaaaaaaaaagaacattgttGTATGCATTCTTGTTTTGTGCCTGATGTAACCTGTACCACCAAGCAGATAACATTAACGCGTTCAGTAGAACTCAGTGTAACAAATCgcaattaatctttttttttttttataaatta
>TU157524
AGGGCTCTGCCGCAGCCGCCAAGGGAGACTTCCTGCTGAGCAGCGAGCGCCTGATCGAGATCGTCACCAAGCTGCACCGCACCGCTGCCAGCACCGCCGGCCGAAGCCAGATCAGAGTGGACATCACCGACGAGTTCCTGGTCCAATTCAAGCAGGACAAGGTGTGCGTGAAGTTCGTCCCAGGCGGGCCCAGGAACGGCAACAGCGCCACCTGCAAGCGCAAGAACAACCGCCTGCTGGAGGTGTCCGTGCCGTCTCCATAGAGGGCCGCGCCGCGCCGGACTGTCCTCCTGACTGTgcaatcttttgttttttttttcttattattttaaatatttttatctCCATGTGCGCTGTCACACCACGACGACGAAGACGACACGAATCTGTGACTCAGTGACGAGACAAGAATGCCTTTTGGAagcatacgtgtgtgtgtgtatatatatatatatatatatatatatatatatatagatgtacaATCAGAATGTCTACGAAAGCGGAGGGATGGATGCTGGTGTGGTTCTGTACGATGTTTTAAACTTTCTTGTAGTGGCGAGAGTGAGTAGAGTGAGTTTccattgatgatgatgatgatgataacatGGTCTGTTCGCTCTCAGTCCTGGTGCTGCCGGGCCCCAGGCTGGGGGCCACAGCCTGCTGAGAGTACTGTGGGTACTGTGTGACGCAGCCGCCAGGACGGGGGTGTCGGAGGGGGTACTGGAGTCAAGTGAAGCCGTGGGAGTTTGTGAGGGGCTGGACTGGGCTCTCTTGCtgttcgtttttgtttttgtttgggggaGAGGTGTGATTTGCTTTGTGTACacaccacacacgcacacatacagacagacacacacacacagacagacacacacacacagacagacacagacacacgcacacacacacacacacacgcacacagacacacgcacacacacgcacacacacgcacacacacacacacacacagacagacacagacacacgcacacacacacacacgcacacagacacacacacgcacacagacacgcgcacacagacacgcacacagacacgcacacagacacgcacacagacagacacacacacagacacacacacagacacacacacacacacacacacagacacacacacacacacacacacacacagtcttacATTCGAAGCTCACTCGCTCACCCCACACCTGTACACCAGTGAGGAGCAGGCAGGCTGCCGTGTGTCGTGCTGTCGGACCGTGTGTGTCGGGGCTGTCCTCCACTGAGAGCCTCTCGAGCCTAAAGCCAAATTTTGAATACTCGCCCTCTTCATCTCTCCGGACGGAGTGAATGCCAAAACACGGGGCTCTTTCCGAACAGGAGCCCCGTCCGGACGGACCCCATCCCAGACCGTGATCTGCGGCGGTGGTAGAGTCGAGCACATTTCCGTTCACTTTCCCAGCCCCCGTTTGTAGTGCAGGATTTGTTTCCGTGCTCAGTCCTCATCAGCCGATTCCCGTCTCCCAGTCCCTTCTCTCTGGCCGGCGAGCGGCTCTGAGCAACACAGAGACGCACGTTACACAACAATAGACAAACCTGAGTCctgaattctgtattttttggacaggggaggtggaggggggatTTGTTATCGTTATTCTTATCGATTATAATTTCAAGAATGTCCTGGGATCCCTAAACACGGTGGTAGGGGTCTCAGCCCCAGTGTGTCAGCTGCTTGCCGGCATTTTTCGGAGCCGCACCCCTTCCCAGATCCCCCTGCCCCGTGTCACGGACTGTCCCTCAGgctttctgctttattttgcttattgGTTTGAATGCCAAACCTGTTCTCTATCCCTGCCTGACTGGTGTGTCCTCAGGGCCTGCTGGTTTCTTTGGGCGAGTCCCCAGTTTGGCACATCGCTGTCCTGATCCAGCAGAGAAGTGAGGCCTGAATCCACTCTGTCATCGAGGGGAAGTTGCTCCTGAAGCCGGCAGCTTCTCTGTCATGCTCGGCTCGCGTGGAAGAGTTGGGATCTGCACAGGATGACCCATTGGATATGACCGGAGGAGCCTGCGGCAAGATCATCCTCTCTCCTCGTGCACGCAGTGCCGTGCGTAGGTCTGGCCGTTGATGATTGGATCAAATGGAACCAGGTTTGTCCGCGTTCTCTGGACTGCAGTTCTGTCCACATTCAAACGCTCTCCCTCAGACCAGAGCCGAGACCTCCTGGCCGACCATCGTGCACAGACGAGAGCCCGGCGTCCGGGAACCCAGACCAACTGCGTTCAGAGGTTTCTTCTGTTGTTGATAATCCTTTCTCtgtttgttcaatttaaatttaaatgtaatcaatgcACAATTATCTCACATAAGCCAATGTCAGTAATCAAAAAAAGTGGGTATTTTACATTGAAGTCTATTTAGAATGCAACTTTCTCTGTTCcgtatttttcatgttttcccGTGTGGAGGAAAACCAGGTTTCCAAATTGTGTTTGTGcaagaaaaactgcaaaaaacaacaaaaaaaacagcattgatCACCTGCTTGCTTGTGCTGGCGTTCCTCTTTGACGCGTGTTGTGAATCCAACTCGCGCCGCGGCCGCGGGGAGAGCCGCTGTGTGGGGGAGGCGGTGCCGCCCTGCTTTGGCGTGATTTTGGCTTCTATAGCCCTTCTCTGTGAGTGTATTTAAGACGAATACAAAAAagagcaaacagaaaaaaaaaaaaaaagaacattgttGTATGCATTCTTGTTTTGTGCCTGATGTAACCTGTACCACCAAGCAGATAACATTAACGCGTTCAGTAGAACTCAGTGTAACAAATCgcaattaatctttttttttttttataaatta

Function

symbol description
myo1b Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; brush border; and microvillus. Is expressed in dorsolateral placode; lens; notochord; rhombomere; and somite. Orthologous to human MYO1B (myosin IB).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157522 True 2886 lncRNA 0.51 2 1304095 1307335
TU157523 False 2654 lncRNA 0.51 3 1304095 1307335
TU157524 False 2866 lncRNA 0.51 3 1304095 1307335

Neighbor

gene id symbol gene type direction distance location
AMCG00000704 NA coding upstream 31130 1256781 ~ 1272965 (+)
AMCG00000708 NA coding upstream 54670 1248741 ~ 1249425 (+)
AMCG00000705 NA coding upstream 70161 1226317 ~ 1233934 (+)
AMCG00000702 vwc2l coding upstream 170910 1111881 ~ 1133185 (+)
AMCG00000695 cps1 coding upstream 889300 414444 ~ 414795 (+)
AMCG00000715 NA coding downstream 88061 1395396 ~ 1395970 (+)
AMCG00000712 NA coding downstream 106460 1413795 ~ 1422116 (+)
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding downstream 125657 1432992 ~ 1447408 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding downstream 145277 1452612 ~ 1463637 (+)
AMCG00000717 NA coding downstream 247343 1554678 ~ 1575439 (+)
G125613 NA non-coding upstream 706960 596787 ~ 597135 (+)
G125612 NA non-coding upstream 728603 575290 ~ 575492 (+)
G125605 erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610 non-coding upstream 772183 529899 ~ 531912 (+)
G125597 NA non-coding upstream 816892 456502 ~ 487203 (+)
G125565 NA non-coding upstream 948366 354488 ~ 355729 (+)
G125713 NA non-coding downstream 16168 1323503 ~ 1328639 (+)
G125736 NA non-coding downstream 119298 1426633 ~ 1426943 (+)
G125767 NA non-coding downstream 287488 1594823 ~ 1609210 (+)
G125756 NA non-coding downstream 310473 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 984500 2291835 ~ 2293872 (+)
G125561 NA other upstream 900504 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 292361 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 361510 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 498072 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 4153966 5461301 ~ 5465981 (+)
G127134 NA other downstream 7309864 8617199 ~ 8620195 (+)

Expression


Co-expression Network