G125986


Basic Information

Item Value
gene id G125986
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2427670 ~ 2520585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157948
CTTCCGCCAAAGCGAGATCACACCCTGTATCTGATGAAAGAGTGATGTAATCCCCTAATCCTGCATAAATCCCTCCTGTTTGAAGGAATAGAGTGTGCGTCTTCCTAAGGGGCTGCTGTGGGATTTAACTCATGGAAAAAGACTGGCTGTCGTCTTAGCCCAGTGTCCCTGTCCAAGGGCCACGGGGGCGGACAGTGTGAAGCCACTGGGCAGAGCCGTGTAGCTGCAGCGGGCTGGTGGGGATGTGGGGAGCGGCAACGTGGCTCAGAGGGAACAGCGCTCGAGCGGGCGGCAGGGTGAACGGATCTGTGCCGACGAGACGCTCTGATTAAACCATCCCTGTGCGAAGTCAGTCCCCCCCGAGGGCCGAGTTCAGCAGCAGGACAGGACGCAGAGGGAAGCAAGATACGGGCGGGAAAGTCTAgacttttaaatgcataaaaaaaaatagggaaTCGGACATTTtttttaggatttattttagTCTAAGGTCTTCAGCCAAAAAAAAGACCAATACAGTGTGTACctttataaacatacacacgctatatatatatcacacacacacggtgTGCAGGAGGTCGAGTAATCCAGTCAAAAATAAACTTCACTCAATTAACGTCAGTCGAAACAAAGTACTTTACTGTAGAAATCCTTCAAGAATGTGGTTTAAATAAACGTATTCATCGCTAACACAATAATGCCAAAAAACTAAGAGATTCTCCTCTAAAATGTCAGTTCTACTTCCTAAGGTTTGACACTCATTCCTGTATCCTTTACCTCGGCTCTGAGGCAGCGGGTCGTGTCTGCGCTGTTCTTCGCCGATATAAACGGCCCCGAGGTTCGCGGTGGACGTgctgatgggggggggggggacagttCGGGACGGCGATTCAAGTTTCCAGGAGCTGAAATGCAAGCTGTGTAAACCATGCCGATGAAAGCCAGGGTGGAAACACAATGAAATGGACAAAACGAAAGCGCTCGCTCTGCAAAGCTGCGTGGGAATGGGAAGCCACTTAtctccaacccccccccccccccccccccgccggcCGCGAGTTGCTCATGCACGCCCCCCCCGCACCGCGACAAGCGTTAAGGCGAAGCGAAGTACCAACAGGCGGATCCTCTTCTCCACTCTGGCTCTACACACAcggatgtatatatatatataaatatatatctttgcgtccccccacccccgcagCCCGGCGGTGAGGCGTGccgaggggcggggggggcggctCCGGCTAGAACTGGATGTCCAGGACGATGCGGTCCTCGAAGATGGCGATGAGCAGCATGGTGCCGAAGCCCACCAGCATGCCTAGGTTCTGCAGTAGGAAGTGGCCCAGCCGGCAGCGCTTGTGCTCTTCGCTGTCGCCGTGAAGCATC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157948 True 1398 lncRNA 0.53 2 2427670 2520585

Neighbor

gene id symbol gene type direction distance location
AMCG00000761 NA coding upstream 37207 2389675 ~ 2390463 (+)
AMCG00000762 NA coding upstream 45660 2345321 ~ 2382010 (+)
AMCG00000758 cops8,LOC106581673,LOC103132569 coding upstream 201309 2213649 ~ 2226361 (+)
AMCG00000753 NA coding upstream 268944 2157641 ~ 2158726 (+)
AMCG00000752 agap1,LOC106575763 coding upstream 373136 2053187 ~ 2054534 (+)
AMCG00000766 tmeff2,LOC106581686 coding downstream 439904 2960489 ~ 2977911 (+)
AMCG00000769 tmeff2a,tmeff2,LOC107670719,LOC107728299 coding downstream 475928 2996513 ~ 3011360 (+)
AMCG00000768 NA coding downstream 503933 3024518 ~ 3037733 (+)
AMCG00000767 NA coding downstream 535837 3056422 ~ 3061712 (+)
AMCG00000774 hspd1 coding downstream 601763 3122348 ~ 3133195 (+)
G125955 NA non-coding upstream 133798 2291835 ~ 2293872 (+)
G125756 NA non-coding upstream 805782 1617808 ~ 1621888 (+)
G125767 NA non-coding upstream 818460 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 1000727 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 1099031 1323503 ~ 1328639 (+)
G126036 NA non-coding downstream 37407 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 245670 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 350331 2870916 ~ 2885184 (+)
G126054 NA non-coding downstream 489658 3010243 ~ 3068463 (+)
G126068 NA non-coding downstream 561161 3081746 ~ 3083587 (+)
AMCG00000734 NA other upstream 613513 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 729097 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 821639 1599696 ~ 1606031 (+)
G125561 NA other upstream 2024079 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 2940716 5461301 ~ 5465981 (+)
G127134 NA other downstream 6096614 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 7579698 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 9479079 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 9768365 12288950 ~ 12385042 (+)

Expression


Co-expression Network