G126240


Basic Information

Item Value
gene id G126240
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3652673 ~ 3656581 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158279
AGTTTATTGAATACATGATTGAATTTGTGATGTCAGCAGGTGATTAATGAAGGGTGTGTTTCTTGACCTTCCTCACGGCCTCAAAACCCACCCCGTTATCTGAAACCCAACCCTTTGAATAGATTGACTCCGTGCCAAATCAAATCTGTTTGTGCAGTACATAATGAGACTGATTTTAGAAAGCATCGAAGATGGTTTAATTTGAAACCAGTTGCtgcagaaatgcatttcaatcttACTTCAGTAACAAAGTCTAAAACTGTTTTCTTATGGGTAGGTGTGTATAATCAGTGTTGAATGTCATGCAATACAAGCACTGATCTCTCATACTAATacgtataaaataataatttaatatttcaaatactaGTTAAAATGTGTGATGTTTCCCATTTCCCATTTCCCAGATGCTACTACACAAGAGTCAACAAGCTCCCGTTCTCATGGTTCGTGGAGTCACTCGATTCCTGTTTCTCACAGGAATTTAATGTCAAATAATATTccagaccaaaaaaaaatactcaaaaacatcaaaatactATGAAATTACTTTATCGGTTTAAACCAAACAGTACAACAAGAACCAGTTTTGAATTTCCGTGTAGAAACTGCTGGTTGATGGTCTTTCGGTCTCTGGTCGCAGACACCACAATCTCAACGAGACGCTCGGCCTTGATCACGTCACGCGTCTCGGCCGCCACTGTTTTAAGGCATCGTAGGTTTACGGCAGAACGCTGACCAGATGGTTTCACTGCGTTCAGGTACCATGGCTTAACGGACGTGCTTGTTCCAGTCAACAAGTCTTTACAGCCCATATTTCGCCTTCAACGCCTCCACTTTCTCGATGTACGTCTTCATCGCCTCCTCTTTGCTCATGCCTGtggtggaaaacaaacacacgatTACACCCGAGGTCATTTTCTTTAAAGGGAAACGCTGAAACAAAGTCAACGGGCCTCAGACATTTCTAGGCGAGAGAAGTACGGCAGACGGGTAGGAGAGGGGTTGATAGGGGAAATATGGCCGTGAACATGTCCTTTATCTCCCAgttttttacttcttttattttcttgcaacGACAAGGAATGtccttgaaatgtgtttgtgtgcgttaCTGTCTATATAAACTGCCGGGACCCATCTTGCACGCAGAGATCTCGACCTGTGGAGGGAAACTCGGTCCGATTCCTCTCCCTGCGATCGCTTGAGCAATAAAGTGCTTTGGATAACTCCGAACCCAAACTCAAACTGAAGTCTTTATTCTTCGACACTCAACAACATGGTTAACAAACGTTTGCTGACATTCGGGAAGGGCACGGTGACCTAATTGGTTATTTTGGAAAAACGACTGCTGCAGCAGTCATGAAGGCCAAGAGTGAGCCAATCCTTTATTCATTAGCTTAAATAAAGGggttttatattttggttgttCTAATCCTTTAAATGGAGGACAATGCATACTGTTTTTGATTTGGTTAATTGATAACTTcagcatcttaaaataaattgcctCCCAAAGAAGAAAAGGCGATTGCTTTGCTCCAGTCGCTTCACAAACGCCAGCGATATTCAAAACGGCAGAAACCAGTCAGTGTGCGCTTCGGTACAGACCTTTCCGTGCGTCCCAGGCGTCCCATTTCACTTTCCCAGACAAGTCAAACAAACCCGGGCGTgctTTGCAATCCCCCACCGTGGCCTGTTTGTATAAAGCATAGATCTCCAGCACCTCCGCGTCAGAAGGCTTTGTTTTCAGGTTCTTCACCTCCTCCGCAGCTTTTTCAAAGTCagcctGGACATTATTCCTTCAGTTGCCGTTGACAGGAGGCCCACTCGCTATGACCGTTGCACAGGCGTGTTTGCTGCCGCTTCCTGGCctctaaaaaacacacaaggacTCAGCAGTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158279 True 1907 lncRNA 0.44 3 3652673 3656581

Neighbor

gene id symbol gene type direction distance location
AMCG00000797 NA coding upstream 796 3638170 ~ 3651877 (+)
AMCG00000798 NA coding upstream 60531 3583180 ~ 3592142 (+)
AMCG00000790 NA coding upstream 76765 3569413 ~ 3575908 (+)
AMCG00000793 NA coding upstream 105435 3533139 ~ 3547238 (+)
AMCG00000791 NA coding upstream 130320 3517722 ~ 3522353 (+)
AMCG00000799 NA coding downstream 286 3656867 ~ 3660538 (+)
AMCG00000806 c1ql2,LOC104939125,LOC102789465,LOC100698439 coding downstream 29678 3686259 ~ 3698536 (+)
AMCG00000805 NA coding downstream 106238 3762819 ~ 3763343 (+)
AMCG00000808 ccdc93 coding downstream 252073 3908654 ~ 3928160 (+)
AMCG00000812 NA coding downstream 345545 4002126 ~ 4047678 (+)
G126215 NA non-coding upstream 94249 3555566 ~ 3558424 (+)
G126068 NA non-coding upstream 569086 3081746 ~ 3083587 (+)
G126054 NA non-coding upstream 584210 3010243 ~ 3068463 (+)
G126050 NA non-coding upstream 767489 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 886134 2766255 ~ 2766539 (+)
G126248 NA non-coding downstream 14221 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 69339 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 588151 4244732 ~ 4245036 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 1220286 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 1464464 5121045 ~ 5124330 (+)
AMCG00000734 NA other upstream 1838516 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1954100 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 2046642 1599696 ~ 1606031 (+)
G125561 NA other upstream 3249082 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1804720 5461301 ~ 5465981 (+)
G127134 NA other downstream 4960618 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6443702 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8343083 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8632369 12288950 ~ 12385042 (+)

Expression


Co-expression Network