G127134


Basic Information

Item Value
gene id G127134
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8617199 ~ 8620195 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159397
GCTGATTAAAATGATTTCGCATCAGCATGTGGGATATTCGTGTGAGAATGCGGAAGTGTCGCAATGATTCTTGGGAATTTGTGCAAGATGGCGGCGCCCTGTAGGAATCTGATGGGGACAATTGCTCTAAGAAGTCCAGGTCAGGTGTGGCAGTATAATGGTGCATTGTTGCGCTGGCATCACAGAAGCGCGCCCATGCTTTCTGCAGCAGAACCAGGAAAATCCGCACCTGAGGGACCAGAGTACATTCCCAAACGGAAAGCCCATAACCCTATGATGAAAGTTGGACTTGCTTGGATCATTGGATTACCCTCTGGAATCATTGGTTTTCTTCTTGCAAAGCGAGAGGTTGATAAGAATCGCTTAAAACAATTGAAAGTACGACAGAGGATGAAGAAAGCAAATGAAGGAATTTATGAGCGTGAAAGATACAATACATTACCAAAAACCGAATGACCTGAATCCAGACTGCACTATTAAAACAATCTCTTCCTTCTGCCTGtccatgaaaatgtaataaaatatattgtatatattttctttaattcagtCTCATTTTCCAGTTAGGCGAATTCAAACAAGACCCATGACAATACTAAAACTAGACTTGGTTAGTGTGgtataatgctttttaaattattaaaattggtTAAATGATGATTGAAGTTTACCAGGCCTGTAAAAACTCTTTCTTGACATTTCCATCATGTTAATTTATTCAGACAACAATTAATGAAATGGGGTTTGCATTCTACTTCAGTGCTGCCCAAAATGTCAGAACAGAACTCAACGGACGTGATACAAACATGTTCTTTTGAATGTTTATCTAATGTAAAAGTTGGATGTTaccagagaaaaaaatatactagaaaatgttaattcattgaaatgttattttcatttgtgaattAAGTCAGTGTGCCTTAGTTGATTTCAAATGTTGTTAAACAATGTGAAATCAATCACAAAAGTAAATGACATCGCAACACAAATCTTAGACATATACATTGCATTTggtcatatttatttaacagcacATGCATATTGACAAACAACTGGAGTCTATCCCATTCAACTTGCAGTAACAATGTTTTTATCAAAACATCCATCTTATCTGTGTGACACCAACcaaatatcaatacattttatggaCCCTTTTTAAAGATAGTGTTCTGTATTCATTGTGCTATAAAATTATTCTTCCTCTCAATTTTTCTGCAGCAAAGTTTTCTTTAGGATACAGTTTCTAAGCACCAcctggtttaattttgtttcttaatattcttcttaaatcaatattttgcttTGGAGTCAGATGGTGAAATATACcagcaatacattaaatacattttatttttaacaaaatacagaagtagagcatttttctttaaaataaggaTTTTTTCCCATATtgacaacattttacatttcagggAGAGCCAGTAAAACATTAAACTTTTGTATGGCTGTTTATATTGCACATTGAATAATTACTGTGCCATGCAAAATGCTGacccacacatttattttatggtgcAGGTATAGCTATGCCATTGACAGTTCCAGAACTAATGTCCACTTTCACTTATCGTACATCCCTTTCAATAACCAGTGTAAACAATATCATTTCAGTAACAAGGaatacaatgtatacatttcttcaattaaaaaaaaaaaatacaactcaaATATCCATCACAAATCAGTTAAGCAAAACATATATACgaacaatggaaagaaaaatcaaatgtaGTTATTTAGTAATGGTGCACTTCGTTCACCTTTGATGTTTATGGTTGAATAAAATGATGAGCCCAAGATATTTTAGGGAAAATAATGACATGAACATATAAAGTAGTTGTGGGTATTTGATCTAATAACTACTGCTactgaataaatgaaaaagctCAGGGCTACAGAAATGTGTACACTTCAAACAAAGCATATGTCTCTATGTAGAATGTAAAAAATCAGCATGGCATTTACACATGTAACAAACAGTTAAGTGTGCATGAGAAGAGAAAGGTAAACATCTAATTTTGTTCCTGCTGTTCTTCGGCTCCATTCCTATCTTGACGAGCCAATGAGTTGCAACAGGAAAGTAAAGATCTGGATAATATCGACGTACAGAGAGAGCGCTCCGTAGACATATTCCTCAGGGCTGATGGAGTGTTTTCGATTCCCAATGAGAAGCTGAGTGTGGTAGGCCAAGA

Function

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU159397 True 2213 TUCP 0.35 3 8617199 8620195

Neighbor

gene id symbol gene type direction distance location
AMCG00000904 mcm6,LOC107748580,LOC107705596,LOC107688862 coding upstream 665 8609600 ~ 8616534 (+)
AMCG00000903 dars,LOC107676220 coding upstream 8566 8590668 ~ 8608633 (+)
AMCG00000907 NA coding upstream 41889 8574840 ~ 8575310 (+)
AMCG00000908 si:ch211-246m6.4,LOC107565497,LOC107656681,LOC107600970,LOC107751464,LOC107739350,LOC107653571,LOC107600989,LOC102786361 coding upstream 433174 8182377 ~ 8184025 (+)
AMCG00000906 NA coding upstream 453213 8112982 ~ 8163986 (+)
AMCG00000905 NA coding downstream 8386 8628581 ~ 8635880 (+)
AMCG00000910 NA coding downstream 21479 8641674 ~ 8645197 (+)
AMCG00000913 gmppaa,LOC105902665,LOC107556449,LOC108266472 coding downstream 26458 8646653 ~ 8652047 (+)
AMCG00000911 asic4 coding downstream 178391 8798586 ~ 8799621 (+)
AMCG00000912 LOC106586149 coding downstream 249769 8869964 ~ 8880928 (+)
G127096 NA non-coding upstream 322326 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 327393 8288789 ~ 8289806 (+)
G127038 LOC100136012 non-coding upstream 971479 7629902 ~ 7645720 (+)
G127033 NA non-coding upstream 1003343 7609617 ~ 7613856 (+)
G126982 NA non-coding upstream 1363057 7231353 ~ 7254142 (+)
G127144 NA non-coding downstream 18401 8638596 ~ 8639823 (+)
G127206 NA non-coding downstream 461132 9081327 ~ 9082881 (+)
G127278 NA non-coding downstream 742912 9363107 ~ 9377589 (+)
G127509 NA non-coding downstream 1822798 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 3051573 11671768 ~ 11742750 (+)
AMCG00000848 NA other upstream 3151218 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 6803042 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 6918626 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 7011168 1599696 ~ 1606031 (+)
G125561 NA other upstream 8213608 339640 ~ 403591 (+)
AMCG00000949 NA other downstream 1480088 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 3379469 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 3668755 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 6530080 15150275 ~ 15184392 (+)
G128823 NA other downstream 6788917 15409112 ~ 15420880 (+)

Expression


Co-expression Network