G127278


Basic Information

Item Value
gene id G127278
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9363107 ~ 9377589 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159589
CCACTGCCAAGGCACGCCCTGGTGGGAGGCCAGTCTGAAAGGGTTCATTGTGTGGGGGCTGTGGATGTGGAGTGTGCTGCGTCGTGTGTGGATGCTGTATTGTATGTGTTGTCAGCATCGGAAGGATTACACATTGTAGAGGACCGCTAAGCCTGAATCATGCACATCATCACCATTAGATCAAACTGGGAGTGGTGCAGAAATTGTGCAAGATACGGATAGGAAACacgttttgttttattttttgttgtattggGTTGATCAGATTGCGCGGCTATTGTTTCAGGATCAGGAAAAATGAATGAAGACGGAGAGAATCAAGCGTTCGATTCGAGCGTCTAAAGAATGCCAGAGAGGAGACGCACTTCTGTGGATACGACGCGCTTTGCTGGCTTCGTCTCGTTTGTTCTGTCGGAAAGGGACCAGACTGGGATAAAATAAAGGGAGGAGGTGGGATATTCTCCCCATTAACGGATACATTGATTGTGTCTGGTCTGACACGCCGTGATTTTCTAGTGCGAGAGTGAGTCTCAGACGGACTGAAGCCACCATGGGAAACGCAGGCAGTGTGGACTCGCAGCACACCGAGTTCAGGGCTCACAACATGCCCCTGAAGCTGCCCATGCCCGAGCCgggggagctggaggagaggTTTGCCATCGTCCTGCATGAAGATGCTCTCTGGAGACGGGCCTTGGATGTATTATGGGTTGAATAGCTCGTATCCCGGGCCAGCAGCCAGATTCTATGGACTGAATGGTGTATAGAGAGCTCCAGAATGGGCAGGAGGCCATCAACAACATTCATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159589 True 810 lncRNA 0.51 2 9363107 9377589

Neighbor

gene id symbol gene type direction distance location
AMCG00000927 NA coding upstream 4949 9294471 ~ 9358158 (+)
AMCG00000928 NA coding upstream 82088 9278194 ~ 9281019 (+)
AMCG00000924 NA coding upstream 329989 9032156 ~ 9033118 (+)
AMCG00000918 wnt10a,LOC107663825,LOC107562105,LOC107672309,LOC107560469 coding upstream 402323 8943842 ~ 8960784 (+)
AMCG00000919 wnt6,LOC107672249,LOC107560470,LOC107663826,LOC107562106 coding upstream 433840 8918752 ~ 8929267 (+)
AMCG00000930 fmnl2,LOC107745270,LOC106581828 coding downstream 18029 9395618 ~ 9431056 (+)
AMCG00000929 NA coding downstream 76568 9454157 ~ 9456101 (+)
AMCG00000935 NA coding downstream 140692 9518281 ~ 9553651 (+)
AMCG00000934 kcnj3 coding downstream 198472 9576061 ~ 9577701 (+)
AMCG00000936 kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376 coding downstream 238727 9616316 ~ 9616900 (+)
G127206 NA non-coding upstream 280226 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 723284 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1068234 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1073301 8288789 ~ 8289806 (+)
G127038 LOC100136012 non-coding upstream 1717387 7629902 ~ 7645720 (+)
G127509 NA non-coding downstream 1065404 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 2294179 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 2716552 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 3162492 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 3228450 12606039 ~ 12655172 (+)
G127134 NA other upstream 742912 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 3897126 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 7548950 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 7664534 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 7757076 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 722694 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 2622075 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2911361 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 5772686 15150275 ~ 15184392 (+)
G128823 NA other downstream 6031523 15409112 ~ 15420880 (+)

Expression


Co-expression Network