G127509


Basic Information

Item Value
gene id G127509
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10442993 ~ 10444937 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159869
gatgaatgcaaataaatgtttatttagcaAGAAAACACAGGCGCTTACAGTATTATTCAATGCAAACAAAAGGGGTACttgttatgtcgtgatcacaaGCAGTCATTTAATAGGTTATTCACTCTAAGCAGAATGAATAATCAGAAGGAAGAATATTGAGAAATTatgccacacacaaaaaaaatatgattcagattttttcttgctatatataaatgtctttCTATATGCTGGAGCCCTAGATTTTTAGACACACTCAGTGATGTTTAAGATCTCAATAAAAgacatcaatacatttaaaaagctttatttaaacatttcaggtagttggaaaaaatattaaccATTTTCTTATTAATGAATATCAAACATTATTGCTAGTGtgcatatttatatacttgtaccaataattgtttttaatggaccTGTACAATTAAAGTTCAGTTATGGATCTTTGCTCACCATGTTACAGAACACacaatataaacagacaaacagcatAAAAGTCTCtctttttcaaataatgaagaTTTCCATCAAATTCcattatatgcatatttaaataaactaagggaaaatataaaacagctaACTAAAATAGTCCATGGTCAATATCTAATGATAAAtggttatattaaaaataaatcataattatagtttaaaaaaccctgtgtttaaatagaaaacaaaatacttgatTTACcatcacataacaacaatattataaactgtatttaaagCACAGGatccatttagtttttaaagtatttttcatcAAATCCCTGCGTGTTAAAGGCAACTACTGTACTTCAATAAACATGTGCCCACAtaaccacttattgattatgTACTgtgacaaaataatacatagttCCCAAAGCTGGCGGGTAAGACATATATATTGCCCCTCAAGCAGactgtaaaaatgaaaactgtgaaaGTACATTGCATCACTGTAGTCACAGACTAACAGGGTGTAAACAGATAGTCCTTATGTTCCTGTCCACACTGGCTGGCACTGTGCACCAGTGAGGTCATCTTCCAGCACACCAGCTAAACATCCTCAAACTGACTAACACTTTGTCTTGTTGAAAGACCTTACTGAAGAGAGGAAAATCACCTCAGTTAATTGTGATCTAAAGAGGTAGCATCGCTGACCCCTTTAAACATTAGACCTTGCTTTTTACCTCTGGTATATTACTTGTTtgcttaaaatattaaatactctTATGTATTACTGCTCTCGTATACCTACACTGAATGCATATGAAACGTAACACATTAGTAGTCTTTAGCTTACATGTACAGTGTTCTTTCTTTAGTCCTTAAGAGCCTCTGTGTGTGACATACATGTCGCACTTTTTCCTAAGGGCTAATGTTTTGTAAGTAATACTTCCTTTGGATATCTCTTTTTCAAGGCCAAGTTTATGTCACATGTAAACTGAATGTAGTCTATGGAGATTTTGAGTCCTTGTCCTATATTTCTCTGCTACAGGTTCCAACTTCCAGATGCACGTCTTTATGGTCTAGAGTCCAGTGTTTGAGTCAAGGTCTGTAATAAGGATATTTCCATCTAAGTCTGTAGCCTCTGAACTTGCTTGCCTGTAGTACGCATTTCCGAAAGATGAGAGCCGCCTGAACCGAACTGTATTTCTTCTGTACACAAACCAAACGGATGCTACAAGCACCACAAAAATCAGGATAGCCACCAAGACAGCGACTGGAATCAGCCCATGATGAATACCTGAAACAGACATCGTAATGTTAACACTATACATTTATGACATTTGTATTAGTTCATTTTTAACTGAAAAGTTGTACTTTCCTAACATAAAACTGTTCATTATCACTTAGAGTAATATGCTGCATTTAGAGCTACTATTGAAAACTTTCTAAACATACAGATACCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159869 True 1913 lncRNA 0.34 2 10442993 10444937

Neighbor

gene id symbol gene type direction distance location
AMCG00000952 march7,LOC107584818 coding upstream 51183 10381773 ~ 10391810 (+)
AMCG00000947 tanc1 coding upstream 164782 10201657 ~ 10278211 (+)
AMCG00000946 NA coding upstream 401945 10036674 ~ 10041048 (+)
AMCG00000948 NA coding upstream 407285 10024288 ~ 10035708 (+)
AMCG00000938 NA coding upstream 497541 9938207 ~ 9945452 (+)
AMCG00000959 NA coding downstream 115619 10560556 ~ 10570905 (+)
AMCG00000957 psmd14,psde,LOC107563735 coding downstream 134863 10579800 ~ 10603207 (+)
AMCG00000958 tbr1,tbr1b,LOC105022444,LOC106586185 coding downstream 160731 10605668 ~ 10611409 (+)
AMCG00000967 slc4a10 coding downstream 204675 10649612 ~ 10680286 (+)
AMCG00000966 gran,gca,LOC108242177,LOC106575298 coding downstream 308149 10753086 ~ 10759497 (+)
G127278 NA non-coding upstream 1065404 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 1360112 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1803170 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 2148120 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 2153187 8288789 ~ 8289806 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1226831 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 1649204 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2095144 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2161102 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 2194048 12638985 ~ 12676174 (+)
AMCG00000949 NA other upstream 288806 10100283 ~ 10154187 (+)
G127134 NA other upstream 1822798 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4977012 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8628836 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8744420 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 1554727 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 1844013 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 4705338 15150275 ~ 15184392 (+)
G128823 NA other downstream 4964175 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 5015595 15460532 ~ 15463853 (+)

Expression


Co-expression Network