G128171 (atp5g3,atp5g2,LOC101062993,LOC105908030)


Basic Information

Item Value
gene id G128171
gene name atp5g3,atp5g2,LOC101062993,LOC105908030
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12837651 ~ 12841008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU160703
GGCCAATTTCTCACGTGTACAAGTTACTTTGCAAAGTTACAAATGCAGTTTTGAGTATATTTAAGTGTTTGTTATGCAACTTACCCCTGCTTCAGTTATTATGGTTTGAGAAGTCAAGCTCTACTTTAAAGCCAGTAGAAGACTCTTTCATGTAGGTCCTCTTTTCAGCCATCTGGCGCCAGTCACATTGAACAAGTGCCACAGATAACAGTAtacaacccctccccccacatTTTGTAAACTGCAACACTACCGGCTCACAGCGGGCACACTGATGGCATAAACTAATGTGTGCAGAAGGCATGTTgaagaacattaaaatgatacCCATTAAATGAGCTGCTATAACAAGCCTAGTAGTATTGTCTTtatacaaaaaggaaatgtaatctATTAGTTGGGTGGGATTGGGTAGGTTGCTGAAGGGAGGGGGgtactgaatacaaaaatgtacagtacataggGACAGATTTACAGGTACAGTTAGTCAAAGGCATCAATACCTGCCTTTACAATACTACACAGATGGTCAACCAAGGCTAATATAAACACTGGAAGAAGCCCACTATAAACTAGGTGAATGATTTGGCTCCCCCCCCCCAGTGTTTACTATGAACTAACCCATTCCACATGGTGCAGTCACCTGTTGAGTGTGTGAGGTATGTCCATGAAAAGCCTTAAGCAAATATCCTACTGAGCGCCAACTTAGCTTACAAGGTATAAAATAAACCTGCCATGAATAACCAGTAAGATTGAAAGGTaaattttaatcaatttaagtGATACAGCGGTCAAGAGTTTGCTTCTGAATAAATTGTTTGCTAAATGCTCCTGCAGAAAAGTATGAAAACAACCTGTGCTTTTGCTATAATGCTTCAATTCAGTACATGTTTCACAAGTAAAGATGCAGAAATCAAACCgctattttgaaatgttgtgaAGTATCTAGTGACTAAGGTTGAAAGAAGTCAatgcataaaatacaaaatgtattttagaccttatataaatcaaacatgtattttaattctgtaattgGTTACAATCTTGCAATgcgtttatttgtattttgacagTGTTCAACAAAACCTTGGAAAATGTACACTTTCATGACACCAACACAGAACAAATTTTGGTagccactgtaaaatatgtagttACATCGGAATCTTATTTACGTTAACATCCAAAGCAGAATTTTTACATGGCGAACAAGATCAAGAAAGCAACCATCAAACAGAACAGACCCATGGCTTCAGAGAGGGCAAATCCCAGGATAGCATAGGAGAACAGCTGCTGCTTTAGGGAGGGATTCctGCATAACCAATGATAAGGCTGCCAAAAACAGTTCCAATCCCAGCACCGGATCCAGCCACTCCTACTGTGGCAGCACCAGCACCAATAAACTTGGCAGCAGTGTCAATGTCTCTGCTGACAGCACTGGTCTGGAAGCCCCTGAGTGCtacttgagaaaaaaagttcTGTGGCCCGCTCACAAGTGCGGTATTTccctgaaaaacaacatttaaaccGTTACACGTTTAATCAGAACAACTGAATAACTGGCATAGAAAAGCAAACCAGAATCTGTAAATCCAGAAGACCCGTCACTTTGAAACTCAGCATCCCGTTGACCGAGCACAGCACCGTCACTCACCTCTCCAGTCCTGACCTCTGGCCGAGACAGCACTGATGCAGAGAGGGGTCTGTACAGAGCCCGGGATCCAGCACGGACCTAGCCGGCGTGGAGACGAATTTAGCACAGGCGTACATGTTTCttggatttattttagttgGGATTTGATCGTAAACCCGGGTCTGTCTCTGCAAAAGAACAAGGGAGGGTTAAGGTCAATGGCAATTTTGCAAAATCAAATCTGTACCAGCAACgctaaaataaaaaccaaaaatgCATGCACATCCAAATAATAACATAACCCGGATGATTCGCGATTGAATGGAAGTAATTTTAAAGAGAGGATGAGATGGGATTACGAATGGATCGTCTCTGAGGTTCTCTACCGCTCTCCTTCACTCACCGGCAGCAGAGGTCGAACC
>TU160704
GGCCAATTTCTCACGTGTACAAGTTACTTTGCAAAGTTACAAATGCAGTTTTGAGTATATTTAAGTGTTTGTTATGCAACTTACCCCTGCTTCAGTTATTATGGTTTGAGAAGTCAAGCTCTACTTTAAAGCCAGTAGAAGACTCTTTCATGTAGGTCCTCTTTTCAGCCATCTGGCGCCAGTCACATTGAACAAGTGCCACAGATAACAGTAtacaacccctccccccacatTTTGTAAACTGCAACACTACCGGCTCACAGCGGGCACACTGATGGCATAAACTAATGTGTGCAGAAGGCATGTTgaagaacattaaaatgatacCCATTAAATGAGCTGCTATAACAAGCCTAGTAGTATTGTCTTtatacaaaaaggaaatgtaatctATTAGTTGGGTGGGATTGGGTAGGTTGCTGAAGGGAGGGGGgtactgaatacaaaaatgtacagtacataggGACAGATTTACAGGTACAGTTAGTCAAAGGCATCAATACCTGCCTTTACAATACTACACAGATGGTCAACCAAGGCTAATATAAACACTGGAAGAAGCCCACTATAAACTAGGTGAATGATTTGGCTCCCCCCCCCCAGTGTTTACTATGAACTAACCCATTCCACATGGTGCAGTCACCTGTTGAGTGTGTGAGGTATGTCCATGAAAAGCCTTAAGCAAATATCCTACTGAGCGCCAACTTAGCTTACAAGGTATAAAATAAACCTGCCATGAATAACCAGTAAGATTGAAAGGTaaattttaatcaatttaagtGATACAGCGGTCAAGAGTTTGCTTCTGAATAAATTGTTTGCTAAATGCTCCTGCAGAAAAGTATGAAAACAACCTGTGCTTTTGCTATAATGCTTCAATTCAGTACATGTTTCACAAGTAAAGATGCAGAAATCAAACCgctattttgaaatgttgtgaAGTATCTAGTGACTAAGGTTGAAAGAAGTCAatgcataaaatacaaaatgtattttagaccttatataaatcaaacatgtattttaattctgtaattgGTTACAATCTTGCAATgcgtttatttgtattttgacagTGTTCAACAAAACCTTGGAAAATGTACACTTTCATGACACCAACACAGAACAAATTTTGGTagccactgtaaaatatgtagttACATCGGAATCTTATTTACGTTAACATCCAAAGCAGAATTTTTACATGGCGAACAAGATCAAGAAAGCAACCATCAAACAGAACAGACCCATGGCTTCAGAGAGGGCAAATCCCAGGATAGCATAGGAGAACAGCTGCTGCTTTAGGGAGGGATTCctgGGCATAACCAATGATAAGGCTGCCAAAAACAGTTCCAATCCCAGCACCGGATCCAGCCACTCCTACTGTGGCAGCACCAGCACCAATAAACTTGGCAGCAGTGTCAATGTCTCTGCTGACAGCACTGGTCTGGAAGCCCCTGAGTGCtacttgagaaaaaaagttcTGTGGCCCGCTCACAAGTGCGGTATTTccctCAGTCCTGACCTCTGGCCGAGACAGCACTGATGCAGAGAGGGGTCTGTACAGAGCCCGGGATCCAGCACGGACCTGCACCAAGACGGACACCGTTACTCAGACAAACCTGGAAATCAGCANNNNNNNNNNcccccccacacacacacacacaatcagggaTTTCATACACATTATATAACCTGTGTGCATTGCCTTGCACTAtgacattgaaatgtatatatttcagtagATCAGTAATAACCTAAATCTCACAAGGACAAGCTTGTGTTTGATCAAAGTCCACTGCAGTGCAATTCACCGaagagcaaaaataaaactgcacagaAGACGTAGGCAGCTTGGAAGGCACCTTGAAGGTGAACAGGCTGGTTCTGATCTACAGCAGTTAACATTTTAGCCAAAACACTAATTTGAAGACACCCACATCAAAGTGTCATATTGCCAAAGCTTCCCACTCATAATAACAGTAAGGTGGTCTTTCATCTGCTTTGTCCACCTCCTAAATTAGAGGACATACCGCAGTTGCAGAACCTATTCAGCAAGGCCCAAGTCTGAAACAGCCATAGCATTCAAACAACCCCCCAGATTTACAAAACACGGATTTCTACCCTGTTTGAATAGACCTTTCATTGAGTTGGTGCggtttttaatggattttctattggaatacataattaaacagCATGACCTTGAATGGAACAAAAATGCCGGAATACTCTACTGAAGTCTTACAAGAGAGAGgttaattaaatgcatcacCATTATGATTTAGCAAAAGATACAGCAATGAGCACGTTTAGAAAAATATTGGTAATTTTCTAAGTGTGCATATGCCTGACTGTCACCATCTATAGGAACAGGATTCAAACATATATTGCAAAAAGACCCTCAAGTTCAGTACCAGGCCTACATGGAAAAAATGAGAATGACGTGAAAGTAATGCATTTGAAAGAGAAATTCACAGAAAAACTCACCAGAGCCGGCGTGGAGACGAATTTAGCACAGGCGTACATGTTTCttggatttattttagttgGGATTTGATCGTAAACCCGGGTCTGTCTCTGCAAAAGAACAAGGGAGGGTTAAGGTCAATGGCAATTTTGCAAAATCAAATCTGTACCAGCAACgctaaaataaaaaccaaaaatgCATGCACATCCAAATAATAACATAACCCGGATGATTCGCGATTGAATGGAAGTAATTTTAAAGAGAGGATGAGATGGGATTACGAATGGATCGTCTCTGAGGTTCTCTACCGCTCTCCTTCACTCACCGGCAGCAGAGGTCGAACC

Function

symbol description
atp5g2 Predicted to enable lipid binding activity and proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; eye; genitourinary system; heart; and nervous system. Human ortholog(s) of this gene implicated in renal cell carcinoma and urinary bladder cancer. Orthologous to human ATP5MC2 (ATP synthase membrane subunit c locus 2).
atp5g3 Predicted to enable ligand-gated channel activity. Predicted to be involved in ATP synthesis coupled proton transport and pore complex assembly. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3).

NR:

description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160703 False 2058 lncRNA 0.42 3 12837651 12841008
TU160704 True 2814 lncRNA 0.41 3 12837651 12841008

Neighbor

gene id symbol gene type direction distance location
AMCG00001047 NA coding upstream 24284 12812414 ~ 12813367 (+)
AMCG00001037 NA coding upstream 129868 12697219 ~ 12707783 (+)
AMCG00001036 sp9,LOC106586239 coding upstream 146995 12688778 ~ 12690656 (+)
AMCG00001025 NA coding upstream 301585 12529789 ~ 12536066 (+)
AMCG00001028 NA coding upstream 308547 12523818 ~ 12529104 (+)
AMCG00001052 NA coding downstream 156104 12997112 ~ 12998946 (+)
AMCG00001050 NA coding downstream 161927 13002935 ~ 13004035 (+)
AMCG00001049 hoxd9,hoxd9aa coding downstream 168688 13009696 ~ 13023750 (+)
AMCG00001053 NA coding downstream 188035 13029043 ~ 13029447 (+)
AMCG00001056 hoxd3,LOC107716912,LOC107600705,LOC107657387 coding downstream 202600 13043608 ~ 13063126 (+)
G128107 ola1,LOC107660044 non-coding upstream 161477 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 182479 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 297333 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 740788 12094141 ~ 12096863 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 1094901 11671768 ~ 11742750 (+)
G128255 NA non-coding downstream 516483 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 620658 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 1243278 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 1932610 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 1935851 14776859 ~ 14779441 (+)
AMCG00001022 NA other upstream 452609 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 826226 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 2683464 10100283 ~ 10154187 (+)
G127134 NA other upstream 4217456 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7371670 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 2309267 15150275 ~ 15184392 (+)
G128823 NA other downstream 2568104 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2619524 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 5182052 18023060 ~ 18044251 (+)
G129453 NA other downstream 5704885 18545893 ~ 18547915 (+)

Expression


Co-expression Network