G128823


Basic Information

Item Value
gene id G128823
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15409112 ~ 15420880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161502
atttgtttaaacagCAATCATAGCAACTTAAACTATATTGAATATGTAGTCTAAGAAGGtgcaagattattattatatttactatTACAATTAGTATGGTTTTAGAAGCTGGATGTTgtagaaaatatacattagaaccaaaacagaaaatgaaatacacagaATCAGCCAGGTCTGAAAAGATCTGCTACTGAAATtagttttacttaaaaaaaaactccagacTCATCGATTGTATTCTGCAAAGTGTAGAAcctaaaataatacagtaaactaAATGTTACTGAAATACTGTATGCTAGGtctcttgcttttctttcccAGCTGTGAACTTTAAACTGTCACCACAGTGATGTATTTCAGATTTAAGAAATAAGACATTAATtgcagtttgaaaatgtaaattttaataACTTGacaaagttatattttaattaacagatGAAATAATGAGTAAACACCCACAATATAACCCCCAAGGTGAAATACGTGTTTTCTTAACTGTTATAAATACCTAGTgttaccattttaatttctaaCTTCTAACTTTTAACTTCCCTTTATCAGAGTTAAAAGAGAAATActgaatacatgaaaaatacattctgaaagaAGTAAAAACAGTATATGACTCTGCAACATTACGGGAATATGCAGGTTTTAGAAACACCTTTTGCAAATCACTCATAATATGCAAGAAAAATGGaagcaacatttatatttatatcacaatattaatatatttaattaatttctaatgatgggaatatttttaaaatacatattgagtAGAGTGCAGgtaaaaaatagaacaaaaaacacttttacatataaaaaagtatattaaaatcCTTTCAGAAAACCAAAACCCCAAAACCCGAAAAACCCAAAGGTAATTGAGTGGCTTGTCCTGTTCTTCAGAAGAGCACCTCATTTAGGCATCTGCAGAACATGGCTGTATAATCAGAGCTGGACAAAGGAAGAAGAACTTTCAACATTGTTCACAAATACAGTTTAcatctcttttctttctctatgcatatttatgtgtattaatGAGCCTTCTGAGCATCTGTATTTCAGAAGCACATGTAATTTGGTCACTTGAAGTCATATTAGAAGAAGGTTGCTGCTGTTTTCCccacaattattcaattaaccaAATGTACAAATCACACTGTAACAATCGTGCTGCTCAGAGTTGTATGTTTTAGGTGGAACTCATCAATTGTTAACATTAGTCTGAAAATATGGATTGAAAGTTATAAAAAGTGCcctaattgtttaattgctgGTAGTATAGATGCCATTGTTACCCCTCAGTGGTGCCCATGGTGCCCGTGGTGCCCATGGTGCCCATGGTGCCCGTGATGCTCGTGGTGCCCGTGGTGCCCGTGGTGGCCATGGTGCTCATACATGTTGTGACCATGGCCATATCCATAATTTTGCCCAATAAAAGGCTGATTGGGAAATGGCTGGTAATATCCAGGTTGGCCAAGGGCATAAGGCTGGAGACATCCATCTGGCCCTATGAAATAGCCCTGAGGGATCTGGGGCAAGCCAGATTGATGGTGGTGTCCTACAAGGAAAGATTATTGACTAATACAgtaaatgctgtaaaatgtactttctttATACTGTCAATACATTATTCACACTAAAGGATAAAACTACACTGGTTGTCCTTCTTCAAACATTTAATACTTGTAAGGGTTGCAGAATTctaataacttaaaaatgttaattattttgaagaGTGCTGATACATAGTATTCATTGTTCTTGGAGTAGAAAACAAGGACACATCTGGATGTTTTCAAGTGACACTGAATGAGTTAGAAACAAGgccaaataatgtattaaacttTCCTATACAATTCAGCAATTTAATTccactaatactaataaaattTTATGTTGTGAGTGTGAATAAGTGATTTAGGGTAATAGAAAATATTACCTGAATGGTGGCCccacattttgaattattttacctAAAAGTTGGGGTGGAACAAAACGTATGTAATTGTCAAAATTCAAGTTATTGAAAAaagtgaatacaaaaaacaaaatcaaacaaacgtaataaagttattttgaatgcatttgacatgaaacttaaatatatacagttttttctttcttcgaTATCTATGGAAGGTGCTCCCACAGCAATGACGTAAAGAGgcacattttttccattttgttttgttgttttttaagttgttgCAAATACATACGTATGGAAATTCAACTTGAAATTGAAAACTGTTCTGGCCCATTGCCAGGTCAAGTGTTAAGTTACCAGCTCTAGCTGCTCTCTTCACTGGCTCAGTGAGGTGGATATTTTCTCTTTTGGGCTCCAAAACAGTGCTCAAATATGCCCAATTTGGTATTTTTAGCTGGAGTCTGTTAGTCAAAGACAGGTCATAATCTCTCAGGTACATATAGATAAAATAAAGAGGATTGTACCCGTCAATCTTCACCTTGATGTAACCAGCATGTGAACACAACTGGATGAACCTTTACAGTTACATTTACAAGag
>TU161504
atttgtttaaacagCAATCATAGCAACTTAAACTATATTGAATATGTAGTCTAAGAAGGtgcaagattattattatatttactatTACAATTAGTATGGTTTTAGAAGCTGGATGTTgtagaaaatatacattagaaccaaaacagaaaatgaaatacacagaATCAGCCAGGTCTGAAAAGATCTGCTACTGAAATtagttttacttaaaaaaaaactccagacTCATCGATTGTATTCTGCAAAGTGTAGAAcctaaaataatacagtaaactaAATGTTACTGAAATACTGTATGCTAGGtctcttgcttttctttcccAGCTGTGAACTTTAAACTGTCACCACAGTGATGTATTTCAGATTTAAGAAATAAGACATTAATtgcagtttgaaaatgtaaattttaataACTTGacaaagttatattttaattaacagatGAAATAATGAGTAAACACCCACAATATAACCCCCAAGGTGAAATACGTGTTTTCTTAACTGTTATAAATACCTAGTgttaccattttaatttctaaCTTCTAACTTTTAACTTCCCTTTATCAGAGTTAAAAGAGAAATActgaatacatgaaaaatacattctgaaagaAGTAAAAACAGTATATGACTCTGCAACATTACGGGAATATGCAGGTTTTAGAAACACCTTTTGCAAATCACTCATAATATGCAAGAAAAATGGaagcaacatttatatttatatcacaatattaatatatttaattaatttctaatgatgggaatatttttaaaatacatattgagtAGAGTGCAGgtaaaaaatagaacaaaaaacacttttacatataaaaaagtatattaaaatcCTTTCAGAAAACCAAAACCCCAAAACCCGAAAAACCCAAAGGTAATTGAGTGGCTTGTCCTGTTCTTCAGAAGAGCACCTCATTTAGGCATCTGCAGAACATGGCTGTATAATCAGAGCTGGACAAAGGAAGAAGAACTTTCAACATTGTTCACAAATACAGTTTAcatctcttttctttctctatgcatatttatgtgtattaatGAGCCTTCTGAGCATCTGTATTTCAGAAGCACATGTAATTTGGTCACTTGAAGTCATATTAGAAGAAGGTTGCTGCTGTTTTCCccacaattattcaattaaccaAATGTACAAATCACACTGTAACAATCGTGCTGCTCAGAGTTGTATGTTTTAGGTGGAACTCATCAATTGTTAACATTAGTCTGAAAATATGGATTGAAAGTTATAAAAAtgcccaaattgtttaattgctgATAGTATAGATGTTACCCCTCCATGGTGTCCATGGTGCTTCTTGTGACCTCGGCCGCGTCCATGTCCATGCCCATGGCCTCGCCCACACCCATGGCAATGCTCGTGCCCATGCCCATGACAATGCCCATGCCCATGTTCGTGCTTGTGATTGTGACCATGACAAGGCTGAGTAGGACATGACTGGGGGCATCCACCTGGACCAGGGGGACAAGGTTGTGGGTATCCACCTGGGCCAGGGGGAAGAGGCTGGGGGAATCCACCTGGGCCAGGGGGACAAGGTTGTGGGTATCCACCTGGGCCAGGAGGACAAGGTTGTGGGTATCCACCTGGGCCAGGGGGGTATGGTTGCCCAGGCCCTGTGGGATAGCCCTGAGGGTTCTGGGGGAAGCCAGAAGGATTGTGATTTCCTACAGCCCAAGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161502 True 2546 lncRNA 0.34 2 15409112 15412710
TU161504 False 1717 TUCP 0.37 2 15409112 15420880

Neighbor

gene id symbol gene type direction distance location
AMCG00001112 NA coding upstream 57752 15351085 ~ 15351360 (+)
AMCG00001109 NA coding upstream 85473 15318950 ~ 15323639 (+)
AMCG00001108 NA coding upstream 90674 15295104 ~ 15318438 (+)
AMCG00001103 NA coding upstream 126009 15269252 ~ 15283103 (+)
AMCG00001101 NA coding upstream 145102 15261751 ~ 15264010 (+)
AMCG00001113 cnot9,LOC103363318,LOC106575212,LOC106574282,LOC105022524 coding downstream 54944 15475824 ~ 15481816 (+)
AMCG00001121 plcd4a,LOC107739328,LOC107600964,LOC106575211,LOC103363317 coding downstream 66273 15487153 ~ 15499125 (+)
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding downstream 90631 15511511 ~ 15518433 (+)
AMCG00001123 NA coding downstream 97593 15518473 ~ 15524200 (+)
AMCG00001120 NA coding downstream 104966 15525846 ~ 15529959 (+)
G128815 NA non-coding upstream 50098 15358643 ~ 15359014 (+)
G128772 NA non-coding upstream 82892 15325994 ~ 15326220 (+)
G128747 NA non-coding upstream 197787 15210353 ~ 15211325 (+)
G128697 NA non-coding upstream 335210 15071073 ~ 15073902 (+)
G128663 NA non-coding upstream 629671 14776859 ~ 14779441 (+)
G128919 NA non-coding downstream 145521 15566401 ~ 15886602 (+)
G128928 NA non-coding downstream 460475 15881355 ~ 15882299 (+)
G128938 NA non-coding downstream 500493 15921373 ~ 15921574 (+)
G128939 NA non-coding downstream 500794 15921674 ~ 15922039 (+)
G128941 NA non-coding downstream 502152 15923032 ~ 15924810 (+)
AMCG00001098 NA other upstream 224720 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3024070 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3397687 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 5254925 10100283 ~ 10154187 (+)
G127134 NA other upstream 6788917 8617199 ~ 8620195 (+)
AMCG00001114 NA other downstream 39652 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2602180 18023060 ~ 18044251 (+)
G129453 NA other downstream 3125013 18545893 ~ 18547915 (+)
G129442 NA other downstream 3134271 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 3467404 18888284 ~ 18889724 (+)

Expression


Co-expression Network