G129221


Basic Information

Item Value
gene id G129221
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17487392 ~ 17550791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162040
taaaagaaagggggcatatatttatttgtattgcttcatGTTTTTAACAGAGCACAGTAGTTGTTGTTCCGATATAGTGTGCAACAAGTCTGTCAAAGTACAAAGATATGTaagcattcaaattcaaaccCTAATAGAAGCCTTCTACgttaaataaatgattggaAACCTTGAAATGTGTATGAATCTACAAATACCAGCAGTTGTTTTTTATAGCCACTTTATTGCATAGCTTTTCTGTGTAACCTCAGATTCATTACGGTCTtggaaaatattcaaaaaacaGTTCTCCAAGATTGtccaaattcaaaataataaagtcaCATAATATAAGGAGCATTTAAACATGAAGTCTGAATGACCATCAGACCACCAACTCAACAGAAGTAAAGGCTGTTAACAGTTCTAATGCGTTTCTTGCAATGTAGTGCCTTTTTCCCCAATGTCCAAAGTGTAGCCTATAGAAATATTATAATAGAGTCCAATTTTGAGGCCGTACTACGAATTTCGAGGCAGGGCAGAGACATATGGTTTACAATGACTgggcataaaaaataaaaagagttcTAGGCCTAGGAGATTGTCGACTGTTAGGATAATGCATGGGCCCTTTCACCCTAAATATTTTACTACGGTGTCACTACCCTGGTATGTAGCATTAGAGTTTCCAGAACCACTTTACCTCGTCTTGAGAAACCTTGTCTTGAGTCTGGAGTCTCACATGACTGGTAAGCTGAAACAGCACAGTGATAGTCAGGCTGTAAACGGGAGTTTGAGATAGGACATCTTATCACATCAGAACAGAACAGCAGGGATGTCTTTTATCTATCCACTGCTGGGTTTGTTTTATGAAACACAGGCATACATCAGCAATCATGGTTGAATCCtcagaaaacaatcaagataaCCTCCAAAAtattcaaagagaaaaaaaaaaagatctaccAAAAAAAGCTTACAAATCCTTATCtgcatcagaaaaaaaaaaaaaaatccagttataaatgtatttgttttggatcTTATTGCCCAAATTCGTTCAGTTCTTTCAgggtttctatttttatagCTGCAGTGAAACAAAGTTGCAAACcagtaaaattatttatatatatatatatattttattacaatatgcCTTGTTAAATACCCTATTCTAAGCTCGAGGGGCCATAGCTTATGGACCAAGGGAGACTGGAGTTAATATTTGAGTAATGTAACTGTCTTTTTTGCAATAAGATCCCCTTATATTTGGCAGCTAAACATTCCCACTGAGATGCGCTCTTTAGCTGCTTGCAAGGCCAGATTATTAGGAAGGAAACCAGAGATGATTTCAAATCTAGTGTTAGAATCACTACTAAGCAAGATTTGTAGTTAATGTGTTATCAATTTAATAACTTTCTCTAGAGAATTGCATGAATCTGGAACCAATTAATTTGACATGACAAAGGATTTTAATCATCTCAACATGAATTCAGCTAATGAATGCACACACGTCTGCAATTACAATTATGTTCGCAGGCCTGAATCTGAATTTCATAATAAGGAAACGTAATTAACTTTACTTTAACATTTAAGAGGAAATTGTTCTCAGGTAAGGGCACTTCATCTAAAATCTTACCCTGCTGCTTGAAAAACACTTATGAGAATGTGATGATCCACAATGCACTGCTGCTCGAACAGCATCcattaaataaggaaataaaaaataaccaaaaagcaaattctatattttttgtattttaaatttcacCAAAGATCATGTTAATTATGTCAGCTAGTGTgctctaaattaaatatttcaaattaagccAGCACAAAgtctattaaaatatgtaactacaatatttcagaaaaatacaaGTATTCTGATGATTTTCTCTCAAAACCATCAGaattttttctcatttctatttactaaacatatatattatactatatcatcatcatcatcatcatcagccagGTATTTCCAGTTGTTTCGAACTACAGAGTCtctttccaggtcacaccagcaaatccTATTTCACCTTCCCCTCTGTTATGTGTTCGTCTTTCTagatcttttttcatctcttgggatcccttcttttgtccatctttggtctgatcttcttgcagtgtgtccggcccattgccattttaacattttcactttcaatgaTGTAACATAGGTTTGTTTATTCTCaaattcatttgtttatttgtctctGCTCATTATTCCAAGCATCCATCTTTcaatgcttctttgtgttgtccgCAGTCTCTATGTAATTTTTGCGATTAGTGGCCAGGTCTCACACTCATTAATGAGCACTGATTGTATGCATTGATTAAATACTTTCCTCTTCAGGTAAATAGGTAGATTTGGTTTCAGTGGCAGCTGTTTCGTCCCAATGTACTCCTCCGATTTTcactcttttgatttcttccaaaGGATTTGCATCTGCTTGAATTACTTCTTCAATattttgatctacttcaattttcttatttttatcaaaattaatttggttttattcagTTCATTCAAGTCCAGGTGGAGCCCCCCCCATGGCAGTACACAGTGGTGGTCATCTCCTTTCTGGTGAGCAGCGCCGCAATCTCTTCCTGGGAGGGCACAAACTCCCTCGTCTTGGTCTTCTTCAGGGACTCTCCGATGAAGTGGGCATACTTCTCAATCTCCGTCCCCGAGAACTGCTCCTTAATCCTGTAGGAGGGAAACACAGCAAGGGCAAGGATGAAGTCAGGAGATGGAGAGCTCGAGGCAATGTGCACAGACAGCAAAGACAGGACGTCATGGCTTGAATCTGAAGACTGGGCTATATCAGCCTGTCAGTTT

Function

NR:

description
PREDICTED: titin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162040 True 2842 lncRNA 0.37 2 17487392 17550791

Neighbor

gene id symbol gene type direction distance location
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 65526 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 89373 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 178806 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 190714 17270011 ~ 17296678 (+)
AMCG00001154 NA coding upstream 344405 17125328 ~ 17142987 (+)
AMCG00001169 NA coding downstream 173457 17724248 ~ 17725586 (+)
AMCG00001170 NA coding downstream 196259 17747050 ~ 17755669 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 222154 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 242602 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 307561 17858352 ~ 17866887 (+)
G129080 NA non-coding upstream 340323 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 595031 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1425213 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1562582 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1565353 15921674 ~ 15922039 (+)
G129255 NA non-coding downstream 140716 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 421218 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1246059 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1537357 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1554921 19105712 ~ 19108737 (+)
AMCG00001114 NA other upstream 2023539 15460532 ~ 15463853 (+)
G128823 NA other upstream 2066512 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2303000 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5102350 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5475967 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 472269 18023060 ~ 18044251 (+)
G129453 NA other downstream 995102 18545893 ~ 18547915 (+)
G129442 NA other downstream 1004360 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1337493 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1492513 19043304 ~ 19142145 (+)

Expression


Co-expression Network