G129255


Basic Information

Item Value
gene id G129255
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17691507 ~ 17692526 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162082
AGAAATTCccactgaaaaaatacaaagatttGCATATGACCTCGGGGGAAAAGGGGTGTTTTGGTGAAGCTCCTGCCCAGCTCATCTGCAAGTGAGGTGTATAAGACCTGCAGGAGGTCTGGGGAGAGTATTAGGAGTTCAGGATTTCACCGAGACGATCATAGAGACACTGCTCACTCACAGCATGCTCTCCACACTGCAGAGATCGGCCAAGAAGGTCTTCACCGTCCGCAGACTGCACACATCTGGACTGGAAGGTAAAGAAAgtgctcagctctctctctgtctctccactGCATCAGTTCTTAATACATTCAGCcgtttatgtttttttaccaATTTTGTAAATTGATCAAAATCccctttttctgtgtgtgtgtgtgtgt

Function

NR:

description
PREDICTED: apoptosis-inducing factor 3-like isoform X1

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162082 True 386 lncRNA 0.46 2 17691507 17692526

Neighbor

gene id symbol gene type direction distance location
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 269641 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 293488 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 382921 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 394829 17270011 ~ 17296678 (+)
AMCG00001154 NA coding upstream 548520 17125328 ~ 17142987 (+)
AMCG00001169 NA coding downstream 31722 17724248 ~ 17725586 (+)
AMCG00001170 NA coding downstream 54524 17747050 ~ 17755669 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 80419 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 100867 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 165826 17858352 ~ 17866887 (+)
G129221 NA non-coding upstream 140716 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 544438 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 799146 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1629328 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1766697 15923032 ~ 15924810 (+)
G129343 NA non-coding downstream 279483 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1104324 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1395622 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1413186 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1680497 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2227654 15460532 ~ 15463853 (+)
G128823 NA other upstream 2270627 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2507115 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5306465 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5680082 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 330534 18023060 ~ 18044251 (+)
G129453 NA other downstream 853367 18545893 ~ 18547915 (+)
G129442 NA other downstream 862625 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1195758 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1350778 19043304 ~ 19142145 (+)

Expression


Co-expression Network