G129343


Basic Information

Item Value
gene id G129343
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17972009 ~ 17976936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162181
acagGTTCTTTTTTTCATAGATAAAAATAGGTTTTCTAGACTTGAAGTAGTCAGAGTGATTCATATTGGGCAGTAGAACATATTTCTGCCAGCAGTTTGAGCATATCTTTTATCTGTGTGCATTTGGAATCaactgttttaagaaaaaagcagagaaaaaaagaaaaaaaaaccttgagaAAGTCTAGCGGATTGTTATGGATCTTTGTTACTTAGCCTGTGTGTGCCAACACAAGGGATACCGTCCCTTTGGAagagattttaatatttcatctCTTTGTAGCTCACAGTCTTTTTACATACTCTTTGCTTAACGGTTATCAACTAGCTTTTTGCATACTatactgtcatttttttttctcaactgaGCAGTAGCGAGCAGCATTCTGATGTTTTTTTGAGATGGCTTCCGCTTCCCCGAATGGATCatgataagaagaaaaaaaaaaaaaaaaacagcaacaaaaaagaTGGTACCTGtcctaatttaaaaacactgtccaggaaaaaaaaaaaaaaaagtttggaaGCAGTTTCCGAATTGGCTGTTtgaagagggagaaaaaagacagagaaaaaaagaaaagaaaaatgcacacaaattgATGTCTTAATGCTGTGCTCCTTTAATGTAACGCAGCCATAGTTAACAGAATGTGCTCCACATTCTCTGCCTTATATTGAGCACTATTCAACAGCACTATAGAGGAACAATGTGACACAGGGCCGCGATGGTTGATAGATTTGTACTATAAAGGTTGGCTTTATAGTGGGAGGGTGAGGGGGGGGGCGCTGAACAAGCCGGGGAACGCTGCTATAGAAGGGGCAGTGTCTCTCGCCCTTCCCTCTAATCCAATCCACACTAAACGACACAACAACATTTGGCTTTAACCTCTCGATCAGGGAGTTCTCTGTCATGGCCTAACAACTgtgaatgtaaaatatgcagCCTTTTTCCCATCCGTGTCCGGCACTAGAGTTGGTCAGCgggattattcttttttttttccttgtctttgtttattttgtttttatttttcatcccaGGCAGTTATTTGCTGGATGTGCAGGTACGGATGGCCCTGTTTTTTGTGCTTTATATAATCACCATGGAAACATGCTGCCTTAACTGTTACTGATTGGAGAATCTTTCTCTCTCGTCATGAGCTATCGGTTTAGCTATATCTTCCAGACTTTTTAAGGTTAGCGCAAATACAcacaggtttgtgtgtgtatatatatagagagagaaatgtttataaatatattttttttcctattttgtgatgagaagaaaaaactaaaaactttttttttaaactatattttaaatttgatttcaatatgaaattgaagggaagtgttttatttttgaaaacatgaatattaataatataaatgatgGATAATGATGCGatcaatacaaaaagaaaacattaaagtaaataaataaataaataaataaaataaagagatcATTTTCCCAGGACATGGAACAGTGCGCATTTCAATATTGTGATCTACCTCAGGTGTAAGGGTACCTCagtcttttctttaatttccctttttcGAGATTTTGTATGCCTTGTAAAACTGATAGTTttgagcattttttttatttttttaataaaagaaaagaacaagaaaaaaaaatagttgaaACTTTTAAGTCCAAGCAACCTGAACGGGAGGAAAGAGTCTTGAGCATTCAAACTGTATTGTAATCAATGCTCTCCCATTGGCTGGACAACCTCtcaacctttcttttttttcttctttttttttcctttctttttttgataAAGACCTTGAATAACCATGCTCAACGTGAGAACGAAATTGAAGGGGTACATGCCCGTAATGTTTCTGAGTCGAAGGAGATAATGTGTACTGATTTCatgaacaaagaaacaacaacgtcaacaacaacaaacatgcTGTTGTACCAACAGACTGCAATGCCAGTTTCCTTTACTGCAAACAGtgttctgtgaaaaaaaaagacaaaatatatctAGCTAACAAAATATGATTGTAACCCAGCCTGTTGTTACCAACTAGCCCAGATAGGGTTCTGTTCCAGGGATGGTGTAAAGctgaaatcaaatacatttaaacagagaCAGGACCTTAACATGTATATAACACTAGCCTTTACTATAGTACATTATAATAGACTAGTGTTTCGGCTGTTACTGTGTATTGGAGGAAAACCTGTATATCTGTAAACATAGATGTACAATAGAGGACTAATGCAGACTCAGCTGTTTTGCCATTAACCCAACAATCCCTCCACCCCCTACACACATATTGATACATATACACACTGAGACTTAAAGGCAGTGAAGTTTTAGACAACTTTTTCgggtaatttgtttttaatggattaatagataaataaaacctTCCGAAGGAGCCTTTTAAAGGCAGTTTTCTGCAGTCTGCAACCATGTTTTGTGTGATCTGTGAAGCTTGCTTTCAAACTGAACTAACTTTGCACCTCTCTTCTTAAATAGATGTCCACTGACCTGCATGCTTTTCCTGTAattctcaaataaatgtatcaaaatgatttaatcaAGTCAATGCAAAtgacacaaactgaaaaaaaacctGCTTCCCACATGCTCAAGTGTGTTGTTGCACACAGCTGTGAGGAGATAGTATTCAAATACGCAGTATTTTCAAATTGCGCATCTCATTCAAGTCATATCCCGTGAATTCCAGACTTCTAAATTCAAagtttctgattttgtttttatttctttaaaggaaaaaaagaggtggaggtggaggtggcaAACTATTGACATACTGGGAATCAGAGTGATGCAGCTTTTAGATCCTTTAACAAAAGtcacattgtattttgtgttcttCACAGACCACATTGACTATGCATGTTTTTCCACTATATAAATCAATAGTCAATCAACCAAACACTTAAAACACTCGCTTGCGAACACACAAGCGTGCCCTGCCGTGGTGTATAACCGGGCACTTGAGGTGACACAGAGACAGTCAAGAAGATACCATCATCCGATACAAGTTAAGACTGAGAATATGGGAACCCCATCTATAGAACACAGAATCGCTTTAAAACAAACGGATGGGCTCTCAATCGAGAAACTGAGAAAGTGTGTGAGTTCCTGCAGTTTTAAAGTATATGCTAGGGCATCTGAATTCCTCTGCAGAACAATAATGTGGTGTCTGTTCCTTCACGtgcagatgaaaagaaaatgcaacctTTTCAGAGCATCACTTCCACCTCGAGTCCATAggtgtaattttattttctggcaAGTATGTCGTTGTATGTCCAAAGACAGTTCAAGACATGCTGTGATTAGGTTTTATGAATTGATAATCTACTAACACCCAGGCAAGTGTGGTAGTCTTAATGTCCTCAGACTCGtccatttgcatttctttggtACTAAAGTTTTAGAAGAAgtttatgctgtttttttactTGAAAAAAACTAACTGAGGATTGTAACTTTTTTTAGTATGTCAGAAATGAAGATGCTTTATTTTGAGAGCAGTGAAGCACTCCCACCAGGGCTGGGTAATTGTTTTGAGCAGAATGGCTTGGGAGGTATATTTTTCATTGGGACATATTTTTCGTATGTTCTGTGTTGTAATAAGGCTCTGAACACTAGAATTATACGTAATTGATTGGAATTCCTAGTGTGTATTTTGGAGATTTGGAGAAGCAGACCTGATTTATCATATTTGGAGAAATATCAGGAGTTCTCCGGAGTGTAAAATGTTCCCAGTACCGCCCAGGGATGGGATGTTCATCTCTTAACTGCTTTGAAATTATGGGATTATGGGAAATTGTGATGGGCTCTTTCAAAGTTCTCATTATAAGGAGGAGATTCTCTTTGAGCCGTTTGATTCTGGTTAGCACAGAAATCAGTGATCCTTCTTTTGGAGAGATTTGGATTTTACGGTTAAAGGCGTCATGCATGTCGTCGTTGAAGGCATGGAAAATACTTCACATTAGGGAATGCAATTGGGAGACGTGTTGGAGGTGGAGTGGGGAGCAACACGAGAGCAAATGTGTGTCTTTCCTGTGTAGAGTTTCTGAGGCTTCAATCATATCATGAACTCAATCACAGAAGGAGCAGAAAACTGTCTTCAAAAGGCAAGATAGATTGGTTACGTGGAGGTTCTTAGCAGGGAACATGAGAATATTACATGACTACTTAGAACTTCATTCTTTAATAGAttccttcctttccttttttcaatttcttttgtttttttaaagacattgcATGGGAGAAATGTCATAGGGTGTAaacatttattgcatttcacATACATGAGTAATAGCTTAGGCGGATTCATTCCTAAACTGAAATTTCACCACTGGAGGTACTTTCGTTCTTTTCACAATCTGAGAGGAAAAGATCTCCTGCCACCAGTTACCATTCGACACCTGTGATAAACGTACAAAGGCTTTTTCATGCTGGTTTAGGAGGTGATTCATTCCTTATGGTAACAGCCAAGCTGTGCTTTTGAATTGTGGGTGAACTGTACTGCCGACCAACCTGGATATGAGCAATAAAGAAAGTCTTCAAGTGTTGAATCTATTGTCATGTGAACTTCTCAGGGTtgattttgtgtatgttttgtaacTGTTGTCGTATTCTGTGGCCTTTTTTGAAGCCTGCCAAAtctgcctttttttgttttcttttaatcaaattattttggtgtcatgaggaaaataaattgacagaaataaaaattacTTGGGGGCAACAGAATTATAACAATAGCCATTTACAAACCTAACCTAAATTGACCAAGGAATGATAGAAAGCTACACTACATATGAAATGTCCACTGCATAGTACAGcaaatgttgcattttcaaGAGCTGTTCTACAagtgtacattaaatatatacattcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162181 True 4928 lncRNA 0.37 1 17972009 17976936

Neighbor

gene id symbol gene type direction distance location
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding upstream 776 17951597 ~ 17971233 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding upstream 69503 17901050 ~ 17902506 (+)
AMCG00001178 tra2b,LOC108258698 coding upstream 74606 17890483 ~ 17897403 (+)
AMCG00001173 NA coding upstream 91620 17872517 ~ 17880389 (+)
AMCG00001174 NA coding upstream 105122 17858352 ~ 17866887 (+)
AMCG00001181 NA coding downstream 12940 17989876 ~ 18011937 (+)
AMCG00001183 NA coding downstream 35522 18012458 ~ 18024201 (+)
AMCG00001182 NA coding downstream 65426 18042362 ~ 18044599 (+)
AMCG00001184 NA coding downstream 260995 18237931 ~ 18252467 (+)
AMCG00001186 NA coding downstream 290140 18267076 ~ 18300206 (+)
G129255 NA non-coding upstream 279483 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 421218 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 824940 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1079648 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1909830 16022258 ~ 16062179 (+)
G129552 NA non-coding downstream 819914 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1111212 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1128776 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1396087 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 1660666 19637602 ~ 19653509 (+)
AMCG00001114 NA other upstream 2508156 15460532 ~ 15463853 (+)
G128823 NA other upstream 2551129 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2787617 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5586967 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5960584 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 46124 18023060 ~ 18044251 (+)
G129453 NA other downstream 568957 18545893 ~ 18547915 (+)
G129442 NA other downstream 578215 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 911348 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1066368 19043304 ~ 19142145 (+)

Expression


Co-expression Network