G129442


Basic Information

Item Value
gene id G129442
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18555151 ~ 18558174 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162309
CAACttctggaaattggccctccaccaccagacattgggaacccctgttctAGAACAAACTTGCCATTACAAACCAAAATAGTTAAGATGGCCACTGAAGTCCTCTTGCTTTTAGAGTCTTATTTCCATAGGCTAcacttgcaaaacaaatatttaattctaattttTCCAACAAAACTTGGAGAAACTATTGGTATGAACATACTTTACCCACCAAGTCCACTTGTTTTCAGATGGAGAACCAATTAAAAGAATAGAAGCCTACTCCCATTTTTAGGTAAATATCCCAGGAGGTTAACTAAGCATATACACCTGTATTACTAATGTTAAATTTAGGGCACCCGTTTTCAAAAGTTAAACCAGTAACTTGCACATATTGCATCAATGCACTAGTTTTTCAACAGATAAATCACACCCACACATCTTTATAAGAACCCAGTAATTGACAATATTTACATAAgcatacatttgcatttcagaattaaaTTCTGAAAATATTGCCTTTGATATACTGCATCTCCATCAGTTGCCGTTTGATCTGCTGCTTCCCATGAGTATGTGCTGACCTAAAACCATTACTTTGCATTAATGATATATTCAGACATTGCCAGTTCTTCTGGCCATAACCAATTAGGGGCcctcaagaaagaaaaaaactccaCGAGCAGATAACACTTCATGAGtttaagacaaaaaacaaaaatcacagaaaaGTGACACTTTACAACTCCTTTTATTGGATGGTGTTTTAGCCAAGATACACGGCTTAGAGTCCATGTCAGTGAAATCCCAAGGAAACTGTACAGAACAAGTTGCTTTTTGAAGAGAGGATCACAGAAGTTTACTGGTCCTTCAGCTCCTTCAGTCTTCTGATGGCAGACTTGACTGTAACTGCAGACGTTGTGCTaaggaacagaaaacaaatccactTACAACTGTAGCATTCCTCAAATATAAACTCTTTTACACTTTCAGACCATTTATTAATCTGCCCCTACATCCAAATTCACTGGCATGTTAGATGTGCAAGGGTTCATAATAAGTCTACTTTCTGGCGgtgatatttttaataaaacctttagAATTGCTgctaattttatacaaatgtaacCTTTGTGAAAAACACTGACAGATTATGCAGTCTGCCTTTCACGTAAGCTATCAAATACCTGatgcttttttcccttccttCTAGGATTTGCAGTTTCAGTACACAAAGCAACAAGAAAAGCACAGAACACATTTGTATCAATTATTCCACATACTTGTATGTCCAAGCGCCTCCAGCAACAGTCTTCATGCAGGACCCACAGTTCCAGATGCCAACAGCCTTTCTCTTCATCTTGGTCTGGAACAGAAGGAGCAGGTGTACTTGGCGTGCTGGGTGATTTCAATCTTCTTCACCATCTTCCTGAGCGAGGCACCATAACGGGTACCGTACTTCCCGACAATCCCAACCTTCTTGGTGCGCTTGGCCTGGGCAAAAATAATACGAAGAGTCAATTCAACTAATATTGTCCCGGTTTTCACACCACCAACCTCATAAAGGCCACAAACATAACTTGAGAAAGCA
>TU162310
CAACttctggaaattggccctccaccaccagacattgggaacccctgttctAGAACAAACTTGCCATTACAAACCAAAATAGTTAAGATGGCCACTGAAGTCCTCTTGCTTTTAGAGTCTTATTTCCATAGGCTAcacttgcaaaacaaatatttaattctaattttTCCAACAAAACTTGGAGAAACTATTGGTATGAACATACTTTACCCACCAAGTCCACTTGTTTTCAGATGGAGAACCAATTAAAAGAATAGAAGCCTACTCCCATTTTTAGGTAAATATCCCAGGAGGTTAACTAAGCATATACACCTGTATTACTAATGTTAAATTTAGGGCACCCGTTTTCAAAAGTTAAACCAGTAACTTGCACATATTGCATCAATGCACTAGTTTTTCAACAGATAAATCACACCCACACATCTTTATAAGAACCCAGTAATTGACAATATTTACATAAgcatacatttgcatttcagaattaaaTTCTGAAAATATTGCCTTTGATATACTGCATCTCCATCAGTTGCCGTTTGATCTGCTGCTTCCCATGAGTATGTGCTGACCTAAAACCATTACTTTGCATTAATGATATATTCAGACATTGCCAGTTCTTCTGGCCATAACCAATTAGGGGCcctcaagaaagaaaaaaactccaCGAGCAGATAACACTTCATGAGtttaagacaaaaaacaaaaatcacagaaaaGTGACACTTTACAACTCCTTTTATTGGATGGTGTTTTAGCCAAGATACACGGCTTAGAGTCCATGTCAGTGAAATCCCAAGGAAACTGTACAGAACAAGTTGCTTTTTGAAGAGAGGATCACAGAAGTTTACTGGTCCTTCAGCTCCTTCAGTCTTCTGATGGCAGACTTGACTGTAACTGCAGACGTTGTGCTTGTATGTCCAAGCGCCTCCAGCAACAGTCTTCATGCAGGACCCACAGTTCCAGATGCCAACAGCCTTTCTCTTCATCTTGGTCCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGGTGATTTCAATCTTCTTCACCATCTTCCTGAGCGAGGCACCATAACGGGTACCGTACTTCCCGACAATCCCAACCTTCTTGGTGCGCTTGGCCTGGGCAAAAATAATACGAAGAGTCAATTCAACTAATATTGTCCCGGTTTTCACACCACCAACCTCATAAAGGCCACAAACATAACTTGAGAAAGCA
>TU162312
CAACttctggaaattggccctccaccaccagacattgggaacccctgttctAGAACAAACTTGCCATTACAAACCAAAATAGTTAAGATGGCCACTGAAGTCCTCTTGCTTTTAGAGTCTTATTTCCATAGGCTAcacttgcaaaacaaatatttaattctaattttTCCAACAAAACTTGGAGAAACTATTGGTATGAACATACTTTACCCACCAAGTCCACTTGTTTTCAGATGGAGAACCAATTAAAAGAATAGAAGCCTACTCCCATTTTTAGGTAAATATCCCAGGAGGTTAACTAAGCATATACACCTGTATTACTAATGTTAAATTTAGGGCACCCGTTTTCAAAAGTTAAACCAGTAACTTGCACATATTGCATCAATGCACTAGTTTTTCAACAGATAAATCACACCCACACATCTTTATAAGAACCCAGTAATTGACAATATTTACATAAgcatacatttgcatttcagaattaaaTTCTGAAAATATTGCCTTTGATATACTGCATCTCCATCAGTTGCCGTTTGATCTGCTGCTTCCCATGAGTATGTGCTGACCTAAAACCATTACTTTGCATTAATGATATATTCAGACATTGCCAGTTCTTCTGGCCATAACCAATTAGGGGCcctcaagaaagaaaaaaactccaCGAGCAGATAACACTTCATGAGtttaagacaaaaaacaaaaatcacagaaaaGTGACACTTTACAACTCCTTTTATTGGATGGTGTTTTAGCCAAGATACACGGCTTAGAGTCCATGTCAGTGAAATCCCAAGGAAACTGTACAGAACAAGTTGCTTTTTGAAGAGAGGATCACAGAAGTTTACTGGTCCTTCAGCTCCTTCAGTCTTCTGATGGCAGACTTGACTGTAACTGCAGACGTTGTTTGTATGTCCAAGCGCCTCCAGCAACAGTCTTCATGCAGGACCCACAGTTCCAGATGCCAACAGCCTTTCTCTTCATCTTGGTCTGGAACAGAAGGTGCAAAATAAGACCACTGCTTTACTGAGATGAAGAACAGTGTGCAACCTTTGCCCTGCTGTCGTTTCTAATAGACTTTTTACTCCTTTAtaatgttcaaaaaattctataAATACCAAAATATCAAGcaagaaatgcatatttatgaGAACGGGCATGTTTGTACAAATAAGACTATCAAGTAATGTATGCTAGTACAAACTTACAGCACAGCATTTATACAAAGACCACCCTTGATCTATGGTGACCACAGTTCAGAAATTCCAGTGTGGACTGAAAAGGGACCAGTGTGGACCAGTAGAGGACTCGTTCAGGCCCAAGATGTCCCCTCTCTGAACACCACACTTGCCCAGCACTACAGTGCTTACCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGGTGATTTCAATCTTCTTCACCATCTTCCTGAGCGAGGCACCATAACGGGTACCGTACTTCCCGACAATCCCAACCTTCTTGGTGCGCTTGGCCTGGGCATTATTGGAAGAGGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162309 True 1573 lncRNA 0.39 2 18555151 18557104
TU162310 False 1216 lncRNA 0.40 3 18555151 18557104
TU162312 False 1519 TUCP 0.40 3 18555151 18558174

Neighbor

gene id symbol gene type direction distance location
AMCG00001189 NA coding upstream 50021 18499105 ~ 18505130 (+)
AMCG00001188 NA coding upstream 60550 18462098 ~ 18494601 (+)
AMCG00001190 NA coding upstream 144097 18374499 ~ 18411054 (+)
AMCG00001191 NA coding upstream 208093 18324606 ~ 18347058 (+)
AMCG00001186 NA coding upstream 254945 18267076 ~ 18300206 (+)
AMCG00001195 NA coding downstream 221760 18779934 ~ 18784243 (+)
AMCG00001202 NA coding downstream 333758 18891932 ~ 18907617 (+)
AMCG00001207 dip2a coding downstream 424106 18982280 ~ 19039418 (+)
AMCG00001212 NA coding downstream 535983 19094157 ~ 19094534 (+)
AMCG00001210 NA coding downstream 565888 19124062 ~ 19130277 (+)
G129343 NA non-coding upstream 578215 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 862625 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 1004360 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 1408082 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1662790 16889638 ~ 16892361 (+)
G129552 NA non-coding downstream 238676 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 529974 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 547538 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 814849 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 1079428 19637602 ~ 19653509 (+)
G129453 NA other upstream 7236 18545893 ~ 18547915 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 510900 18023060 ~ 18044251 (+)
AMCG00001114 NA other upstream 3091298 15460532 ~ 15463853 (+)
G128823 NA other upstream 3134271 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 3370759 15150275 ~ 15184392 (+)
AMCG00001203 NA other downstream 330110 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 485130 19043304 ~ 19142145 (+)
AMCG00001223 s100b,LOC106574292 other downstream 920086 19478260 ~ 19492344 (+)
AMCG00001229 NA other downstream 1906189 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 2053098 20611272 ~ 20676857 (+)

Expression


Co-expression Network