G129552


Basic Information

Item Value
gene id G129552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18796850 ~ 18802040 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162442
TTGTTCCAGAAACAgcacaatatttattcaacatcTTACAGATAGATATTTCTCTCTGCATCGCAGACTGATCTTGATTTCTTTTGTACATCTTTTATTTACAAGGATTTAAaatattcctttctttttaattttttcagacAGATATTTACAACATCAATGGTcaacgttttttcttttttttcttccatgtcAACGCTTCAAACCATTGGAAAGAAACAGCTACAAAGAGAATGGCTTACATGCACAAGTCCAATGACCCTAAACAGACACCCCGAGTCACTGTCAAGAGTCTTTCACAATGGACATTAccacaaggaaaaaaaattgcACTGGCCCCAAAGAAGGGGAACACACATTTAAAGGAAAGGGATGTCCTCTGCATCCCTGTGTGGGAAGTAGAGGCATTCATGACTTGCCAGTTGAGGtctttaatacttttaacagcagtgcagtgctgaAAAGTGTCCCTGGCTTCATTAGGCTCCAAAGTAACACTAGAAGAACAAGTCTCCAGAATAACCAATCAGGAGCCTCCCTTCTCCAGTACAACTGTGTGTATGTTATGACTCTGCTgttgacattaaaaaaaggctatagccttaaattaaaataaaataataataataataagttgTTGCATAGAGTTTGtaaggtttaattttttttctaccccaaaaaaagaaaaaagcaatagcATGTGGTTTACAAACAATGAgccaaatgtattgattgtcagatgaaaaaggggaaaaaaatgaaatcaatgcCTTTATTGAGCTCTTCTACAATGCCTCCCTCCTCCAGAAAGTAAGTTCAGTCATAAGTGTGACTGactttttgatataaaaaaaaaagcatgaaaaatgGCAAGCTAATACGATAACAAAAAGCACCCTTGCTTCAAAGTATTTGGTGGCATCCATACCTTTGCCTAAAGTGTTTGAATAACTGGTGGAGTGGATTGGATGGTGGCTTGCCTTGACCATAGATGAGGTAAAGTGCTAAGAAACAGATCATCAGTCTGTCCATCTCTAGTTTAACTTTAGGTCCCACAGAAGACATGAATATTTCAGAGATCTGAGCATGGGTTTTACCTTAAGACCTTAAACCAGTTAAAATGGCATTCAGGGTTCCTAATAAGTAGCAGCTTTCAGTGATGCAAACCCTTAACGCATTCAGCATTCTATAACCAGCAGCCTTGGGCCAATggaagtataaaaataaaggcGAGACACACCAAATACTGTATATGACATGTCAAATATCAGGGGCTTTGAGCCTGGTATTTGAGAACATGTACAAATGGTACAGATCGCATCAAAGCTGGTGTCTGGTCCCATGTTCAATGTTACGCcagctggaaaataaaaaaaactaaattaaataaaatgtaagcattaaaaaataaaaaaggtttcaaTCTCTTTCTGGTTTCTCCTGTCACATGATTGTCATGGGGCAGGTTGATTCACAAGAAACCACGGACACAATGCACACACTCCCAGCAACACTGTACACCTCGATCATTTTCCTCTTCCTTGGACTTCATCACTTACAGAATGACAGAGGCTAGATtttagacacttttttttttatttccctgatGCATTGCTTAGAGACAGACTATGGTGAGCTTCACAGGACCATATTGAGCAATTAATAACACCCATAAATATCAGAAAAACCCTGTAAATCCATCTTTTGCTATGAATTTGCTttctttatattgtatattgttttacagcCTTCACTTGAGATTTCCCAGTGATCTTGTTATTGgacccacacacagacattgtaaatatataaatgttgtattgatgtctctctctgctgatgGGGGGAGgttgaaaggaaaaacaaaaacaaaactcatcTAGCCATTACACAAATGACTGTTTAGCAGCCTTGAATGCGATCCATTTCAGTGAAGGAGTTGACAGACTTAAATCATAAAATGCTACAGAgaattttcaattatttagttTACTACTGTAGTATGATATCAAAATAGATTTCTGCTCAGACTGTGTACAATCATATAATTTCAGTGTAGCTATATTTCTGGGGTAcagaagtgtattttaaatcagaaaGAATGGGACACGTTTCTTACTTCTCTCCCATTTCCCATTTGACAAAGCACACGAGCGCACACCGAAAGACAGCCCTGTTTCCATCCTTCATGTTTGACGACTACACCTCTAGGAAGCCAAAGATCGCAAAGCTGGTTTCCTAAGCCTGTACAAAAGTCGATGTCTCATCAAAATCTATAATAAATATCATACACTTGCAATTCTTTTCCCCTTGGTAGGTCTCGGGAATGATATCCCTCAACAGCACGTACTTACAATTATCCTACAAGTCCCCCTAGAGTTACATCAGCAAAAATGACAATCTGTTTTGTAACTGCAGGGATCCATCTCCTGGGACTAAGCAGCTGTTTTTGTCCTAAGCAAATACACCTTAAAAGGACCAACAAAAGTGTGATTGATTTCTAGGATTTCAATTTTAAGGAAAGAATAATCGGATTATAATGCAATCCCCTCATGAGGAGCAGGGGCATTGTGTTGTggaatgtatttgaaatcaataCTACTGTGCTACTTCCTCTTGTAGCAAAACAACctaaaatacagcacagattAAGAGAGCGACTCACAGCTATAAATAGGCAGTTGGAGTGAAATATGTATGGTAGTActaaggaaattattttttaaggtaaaTTACCGTGGTTTCCTGACATCGACTAAATGGCTCGTCTCAGCAAAGCTACACTAAGCATCCAGTTGGCGAACGGTTAACTCAAGACAGGtgcacatttcatttgaagACCTTAAAATCAGTGTGAGATTGCGATGAGGAGGAAATTCTCCCTCGTTAATCCTAGATAAATCGCTTTCAATAAGAAGTTCGAAAATACACTCCCATCCGAAGATCATAGAACGTTCTTGCAgtaaggtaaaataaaaaaggctgaTATCCCATGAACTACAAAGCAACACCTTACCTACAATCTGATTCAAGTTTTCAGATCTGTAACCCTTTGACACTGGCAtggataaaatgaaaacatgtctaTTGTAGTTGAAGTCCTGGCTTTGTACAAGCTGCTGCAAGCTTACATTGGGAATCTTCCTGCTTAATACCTCACTACTGCACTACCAAGTAGATAAATAGCACCACTGAATTCTGGGATATCATTTTGCTGACACCAATGTTTTTCAATGAATTAGGCTGTATAAGAAGCAAGCAAACCAATTTAATGAATCCCCATTCATAAGTGAACAGTGGCCATGTAagcatatatatttgatatgaaaACTGTACCTCTGCCAGGAACAATGGTCCAGGCATCTAATGAGCCTCAACTTTGAAAAGCATGTCCCTGTGTGCTTCTCTAACACTACAGCATTAAGACGATTCTCAATTTATCTAGCAGTCTTGTGCAGTATTTGTCCTAGCAGAGCAAAACTCTTTACAATGGGGACGGCCCTTGTAGTTGTCTGTGCTGAAGTGCTTTCAACATGTCAGATCACATACGAATAGCCTGAAAAAGGTGGGGGCTTTGTAACAGACTTATAACTAAAAATAAGGCCTTGGAGAGCAGTCTGTATACTTCACAGCCTTATTAGCTCAATGTAGCAATACTCTCTCAATTGGCACTGCAGCAAAGTAATGGGGAAGGAAACTGCTTTTTCTCCTCAAATCAGAAATGTTCCGACTTCGAAAAGTAAtgataaaattacattatacacacacacacacatacatatatacacacacacacatatacatacacacacacacaaacttccTCCCCCTGATGATATTAACACATTGGTACCAACTGGAACAAGAATGAATAACATACGGTTAACttcaaaataatttactttggATCAAAGAAACTGAACAATTAATTCCTTTCCAATAAACCCACCAATCTGTTCAATagggacaaaacaaaaatacgtttttttttttttaagtgatgttGGATTAAGTTGCGATGTGAAAACTGAAGAGAATAATGCTGCCAGTGACCTTCTTGCCCCTTCCTCTCACTGTTACagctcaatttattttacacacctACCGACTCGGCTGCTGCAATACATTCTTTTACACACAACCGCAAGAAAGTCCGTTTCAAAATAAAGGCCACTTTAAAGGCCTTTCCAGACAATGCTGCACCATTTTAGCTCGGTCAATTTAGACAGGAAATGAGATAAAGTTGCCTGAGCCCCTTGAGCACTTTGGAACagtatatacaataacacaaaaccccaaaataaaTCCAATATCCACCAGTACTCCACGTTCAGTTGGCAAAACAAAGACTCACTCAAACATAGCTTTAATCTAGGGACTATTCAAGGAGTCCAGGGGACCACTATTGTGTCTGCTTTACCTGGTTCTAGAAATGATCTCTGGTACAGTACTGGACAGGAGGCTCTGCTCACATCAGGGAACTAGCTTAGCTCTATGGGGTCTGATTccaagcatttattttcatgtgtgtcTGTTGGATACCACTCAGGTttctgtaaaatgcatgctgtttcCTGCCACCATTCTGAACTTCACTTAGAAATGTCTAGGATCTTGTGTTTTATATCCctcaaaattgtttatttttgttcgtTCCCCCACATGCCATGCCACTGATATATAGTAAAGTTCTGCCTGACCTCTGTGCCAGTTTGATCAGGGAAATCGGAGCATTCGTACAACATCAGGGCCACCTCTGAGGGGAAGATAATTTCAGTATACAGACTTCAACCTAAACTGGCACATTCTAGCCGGTCAGTTCATAAGCACTGCTAGTAATATGGTCGCCAATCACACACACCCGACCTATCTTGTCTAAGGGATACTGTATGTCAAAATGGACTAGATTTTCGTAGCagctgacaattaaaaaaatacattggactgccaaaa
>TU162443
TTGTTCCAGAAACAgcacaatatttattcaacatcTTACAGATAGATATTTCTCTCTGCATCGCAGACTGATCTTGATTTCTTTTGTACATCTTTTATTTACAAGGATTTAAaatattcctttctttttaattttttcagacAGATATTTACAACATCAATGGTcaacgttttttcttttttttcttccatgtcAACGCTTCAAACCATTGGAAAGAAACAGCTACAAAGAGAATGGCTTACATGCACAAGTCCAATGACCCTAAACAGACACCCCGAGTCACTGTCAAGAGTCTTTCACAATGGACATTAccacaaggaaaaaaaattgcACTGGCCCCAAAGAAGGGGAACACACATTTAAAGGAAAGGGATGTCCTCTGCATCCCTGTGTGGGAAGTAGAGGCATTCATGACTTGCCAGTTGAGGtctttaatacttttaacagcagtgcagtgctgaAAAGTGTCCCTGGCTTCATTAGGCTCCAAAGTAACACTAGAAGAACAAGTCTCCAGAATAACCAATCAGGAGCCTCCCTTCTCCAGTACAACTGTGTGTATGTTATGACTCTGCTgttgacattaaaaaaaggctatagccttaaattaaaataaaataataataataataagttgTTGCATAGAGTTTGtaaggtttaattttttttctaccccaaaaaaagaaaaaagcaatagcATGTGGTTTACAAACAATGAgccaaatgtattgattgtcagatgaaaaaggggaaaaaaatgaaatcaatgcCTTTATTGAGCTCTTCTACAATGCCTCCCTCCTCCAGAAAGTAAGTTCAGTCATAAGTGTGACTGactttttgatataaaaaaaaaagcatgaaaaatgGCAAGCTAATACGATAACAAAAAGCACCCTTGCTTCAAAGTATTTGGTGGCATCCATACCTTTGCCTAAAGTGTTTGAATAACTGGTGGAGTGGATTGGATGGTGGCTTGCCTTGACCATAGATGAGGTAAAGTGCTAAGAAACAGATCATCAGTCTGTCCATCTCTAGTTTAACTTTAGGTCCCACAGAAGACATGAATATTTCAGAGATCTGAGCATGGGTTTTACCTTAAGACCTTAAACCAGTTAAAATGGCATTCAGGGTTCCTAATAAGTAGCAGCTTTCAGTGATGCAAACCCTTAACGCATTCAGCATTCTATAACCAGCAGCCTTGGGCCAATggaagtataaaaataaaggcGAGACACACCAAATACTGTATATGACATGTCAAATATCAGGGGCTTTGAGCCTGGTATTTGAGAACATGTACAAATGGTACAGATCGCATCAAAGCTGGTGTCTGGTCCCATGTTCAATGTTACGCcagctggaaaataaaaaaaactaaattaaataaaatgtaagcattaaaaaataaaaaaggtttcaaTCTCTTTCTGGTTTCTCCTGTCACATGATTGTCATGGGGCAGGTTGATTCACAAGAAACCACGGACACAATGCACACACTCCCAGCAACACTGTACACCTCGATCATTTTCCTCTTCCTTGGACTTCATCACTTACAGAATGACAGAGGCTAGATtttagacacttttttttttatttccctgatGCATTGCTTAGAGACAGACTATGGTGAGCTTCACAGGACCATATTGAGCAATTAATAACACCCATAAATATCAGAAAAACCCTGTAAATCCATCTTTTGCTATGAATTTGCTttctttatattgtatattgttttacagcCTTCACTTGAGATTTCCCAGTGATCTTGTTATTGgacccacacacagacattgtaaatatataaatgttgtattgatgtctctctctgctgatgGGGGGAGgttgaaaggaaaaacaaaaacaaaactcatcTAGCCATTACACAAATGACTGTTTAGCAGCCTTGAATGCGATCCATTTCAGTGAAGGAGTTGACAGACTTAAATCATAAAATGCTACAGAgaattttcaattatttagttTACTACTGTAGTATGATATCAAAATAGATTTCTGCTCAGACTGTGTACAATCATATAATTTCAGTGTAGCTATATTTCTGGGGTAcagaagtgtattttaaatcagaaaGAATGGGACACGTTTCTTACTTCTCTCCCATTTCCCATTTGACAAAGCACACGAGCGCACACCGAAAGACAGCCCTGTTTCCATCCTTCATGTTTGACGACTACACCTCTAGGAAGCCAAAGATCGCAAAGCTGGTTTCCTAAGCCTGTACAAAAGTCGATGTCTCATCAAAATCTATAATAAATATCATACACTTGCAATTCTTTTCCCCTTGGTAGGTCTCGGGAATGATATCCCTCAACAGCACGTACTTACAATTATCCTACAAGTCCCCCTAGAGTTACATCAGCAAAAATGACAATCTGTTTTGTAACTGCAGGGATCCATCTCCTGGGACTAAGCAGCTGTTTTTGTCCTAAGCAAATACACCTTAAAAGGACCAACAAAAGTGTGATTGATTTCTAGGATTTCAATTTTAAGGAAAGAATAATCGGATTATAATGCAATCCCCTCATGAGGAGCAGGGGCATTGTGTTGTggaatgtatttgaaatcaataCTACTGTGCTACTTCCTCTTGTAGCAAAACAACctaaaatacagcacagattAAGAGAGCGACTCACAGCTATAAATAGGCAGTTGGAGTGAAATATGTATGGTAGTActaaggaaattattttttaaggtaaaTTACCGTGGTTTCCTGACATCGACTAAATGGCTCGTCTCAGCAAAGCTACACTAAGCATCCAGTTGGCGAACGGTTAACTCAAGACAGGtgcacatttcatttgaagACCTTAAAATCAGTGTGAGATTGCGATGAGGAGGAAATTCTCCCTCGTTAATCCTAGATAAATCGCTTTCAATAAGAAGTTCGAAAATACACTCCCATCCGAAGATCATAGAACGTTCTTGCAgtaaggtaaaataaaaaaggctgaTATCCCATGAACTACAAAGCAACACCTTACCTACAATCTGATTCAAGTTTTCAGATCTGTAACCCTTTGACACTGGCAtggataaaatgaaaacatgtctaTTGTAGTTGAAGTCCTGGCTTTGTACAAGCTGCTGCAAGCTTACATTGGGAATCTTCCTGCTTAATACCTCACTACTGCACTACCAAGTAGATAAATAGCACCACTGAATTCTGGGATATCATTTTGCTGACACCAATGTTTTTCAATGAATTAGGCTGTATAAGAAGCAAGCAAACCAATTTAATGAATCCCCATTCATAAGTGAACAGTGGCCATGTAagcatatatatttgatatgaaaACTGTACCTCTGCCAGGAACAATGGTCCAGGCATCTAATGAGCCTCAACTTTGAAAAGCATGTCCCTGTGTGCTTCTCTAACACTACAGCATTAAGACGATTCTCAATTTATCTAGCAGTCTTGTGCAGTATTTGTCCTAGCAGAGCAAAACTCTTTACAATGGGGACGGCCCTTGTAGTTGTCTGTGCTGAAGTGCTTTCAACATGTCAGATCACATACGAATAGCCTGAAAAAGGTGGGGGCTTTGTAACAGACTTATAACTAAAAATAAGGCCTTGGAGAGCAGTCTGTATACTTCACatatatatatacacacacacacacacatacacatacatatacatatatacacacacacacatatacatacacacacacacaaacttccTCCCCCTGATGATATTAACACATTGGTACCAACTGGAACAAGAATGAATAACATACGGTTAACttcaaaataatttactttggATCAAAGAAACTGAACAATTAATTCCTTTCCAATAAACCCACCAATCTGTTCAATagggacaaaacaaaaatacgtttttttttttttaagtgatgttGGATTAAGTTGCGATGTGAAAACTGAAGAGAATAATGCTGCCAGTGACCTTCTTGCCCCTTCCTCTCACTGTTACagctcaatttattttacacacctACCGACTCGGCTGCTGCAATACATTCTTTTACACACAACCGCAAGAAAGTCCGTTTCAAAATAAAGGCCACTTTAAAGGCCTTTCCAGACAATGCTGCACCATTTTAGCTCGGTCAATTTAGACAGGAAATGAGATAAAGTTGCCTGAGCCCCTTGAGCACTTTGGAACagtatatacaataacacaaaaccccaaaataaaTCCAATATCCACCAGTACTCCACGTTCAGTTGGCAAAACAAAGACTCACTCAAACATAGCTTTAATCTAGGGACTATTCAAGGAGTCCAGGGGACCACTATTGTGTCTGCTTTACCTGGTTCTAGAAATGATCTCTGGTACAGTACTGGACAGGAGGCTCTGCTCACATCAGGGAACTAGCTTAGCTCTATGGGGTCTGATTccaagcatttattttcatgtgtgtcTGTTGGATACCACTCAGGTttctgtaaaatgcatgctgtttcCTGCCACCATTCTGAACTTCACTTAGAAATGTCTAGGATCTTGTGTTTTATATCCctcaaaattgtttatttttgttcgtTCCCCCACATGCCATGCCACTGATATATAGTAAAGTTCTGCCTGACCTCTGTGCCAGTTTGATCAGGGAAATCGGAGCATTCGTACAACATCAGGGCCACCTCTGAGGGGAAGATAATTTCAGTATACAGACTTCAACCTAAACTGGCACATTCTAGCCGGTCAGTTCATAAGCACTGCTAGTAATATGGTCGCCAATCACACACACCCGACCTATCTTGTCTAAGGGATACTGTATGTCAAAATGGACTAGATTTTCGTAGCagctgacaattaaaaaaatacattggactgccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162442 True 4953 lncRNA 0.38 4 18796850 18802040
TU162443 False 4847 lncRNA 0.38 4 18796850 18802040

Neighbor

gene id symbol gene type direction distance location
AMCG00001195 NA coding upstream 12607 18779934 ~ 18784243 (+)
AMCG00001189 NA coding upstream 291720 18499105 ~ 18505130 (+)
AMCG00001188 NA coding upstream 302249 18462098 ~ 18494601 (+)
AMCG00001190 NA coding upstream 385796 18374499 ~ 18411054 (+)
AMCG00001191 NA coding upstream 449792 18324606 ~ 18347058 (+)
AMCG00001202 NA coding downstream 89892 18891932 ~ 18907617 (+)
AMCG00001207 dip2a coding downstream 180240 18982280 ~ 19039418 (+)
AMCG00001212 NA coding downstream 292117 19094157 ~ 19094534 (+)
AMCG00001210 NA coding downstream 322022 19124062 ~ 19130277 (+)
AMCG00001209 NA coding downstream 330995 19133035 ~ 19138617 (+)
G129343 NA non-coding upstream 819914 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 1104324 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 1246059 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 1649781 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1904489 16889638 ~ 16892361 (+)
G129597 NA non-coding downstream 286108 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 303672 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 570983 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 835562 19637602 ~ 19653509 (+)
G129695 NA non-coding downstream 979210 19781250 ~ 19781607 (+)
G129442 NA other upstream 238676 18555151 ~ 18558174 (+)
G129453 NA other upstream 248935 18545893 ~ 18547915 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 752599 18023060 ~ 18044251 (+)
AMCG00001114 NA other upstream 3332997 15460532 ~ 15463853 (+)
G128823 NA other upstream 3375970 15409112 ~ 15420880 (+)
AMCG00001203 NA other downstream 86244 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 241264 19043304 ~ 19142145 (+)
AMCG00001223 s100b,LOC106574292 other downstream 676220 19478260 ~ 19492344 (+)
AMCG00001229 NA other downstream 1662323 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 1809232 20611272 ~ 20676857 (+)

Expression


Co-expression Network