G129843 (LOC107575789)


Basic Information

Item Value
gene id G129843
gene name LOC107575789
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20942072 ~ 20942397 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162800
acagaagcaatcaatcaatcaatcagattccaaactctccaccatggtcaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattggcaaatggaagaaacacaaaataactgtcagtctccctcagtctggggctccatgcaagatctcacctcgtggagtttcagtgatcatgagaacggtgatgaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctg

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162800 True 326 TUCP 0.47 1 20942072 20942397

Neighbor

gene id symbol gene type direction distance location
AMCG00001239 NA coding upstream 70429 20858612 ~ 20871643 (+)
AMCG00001238 NA coding upstream 85728 20847770 ~ 20856344 (+)
AMCG00001240 NA coding upstream 97845 20843118 ~ 20844227 (+)
AMCG00001235 NA coding upstream 163426 20749802 ~ 20778646 (+)
AMCG00001237 ahr1b,LOC107600975,LOC107586968,LOC107751479,LOC107687868,LOC107653601 coding upstream 227590 20708287 ~ 20714482 (+)
AMCG00001243 gls,LOC105022419,LOC102789803 coding downstream 26319 20968716 ~ 20995462 (+)
AMCG00001248 NA coding downstream 172878 21115275 ~ 21118948 (+)
AMCG00001250 LOC105905614 coding downstream 239240 21181637 ~ 21203572 (+)
AMCG00001249 abcb6a,abcb6 coding downstream 282208 21224605 ~ 21226842 (+)
AMCG00001252 cnppd1 coding downstream 361876 21304273 ~ 21315646 (+)
G129756 NA non-coding upstream 345320 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 636215 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 847005 19995027 ~ 20095067 (+)
G129696 NA non-coding upstream 1160210 19781647 ~ 19781862 (+)
G129695 NA non-coding upstream 1160465 19781250 ~ 19781607 (+)
G129904 NA non-coding downstream 298940 21241337 ~ 21241568 (+)
G129961 NA non-coding downstream 466537 21408934 ~ 21409691 (+)
G129972 LOC106582529,LOC105005782 non-coding downstream 513622 21456019 ~ 21456860 (+)
G129984 NA non-coding downstream 599066 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 609033 21551430 ~ 21554095 (+)
AMCG00001241 NA other upstream 16832 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 265215 20611272 ~ 20676857 (+)
AMCG00001229 NA other upstream 445704 20464363 ~ 20496368 (+)
AMCG00001223 s100b,LOC106574292 other upstream 1449728 19478260 ~ 19492344 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other upstream 1799927 19043304 ~ 19142145 (+)
G129877 NA other downstream 134738 21077135 ~ 21078870 (+)
G129913 NA other downstream 328987 21271384 ~ 21276879 (+)
AMCG00001260 NA other downstream 1028902 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 1247511 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 1557638 22500035 ~ 22530836 (+)

Expression


Co-expression Network