G129972 (LOC106582529,LOC105005782)


Basic Information

Item Value
gene id G129972
gene name LOC106582529,LOC105005782
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21456019 ~ 21456860 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162949
GCAAATCACAGCCCAGGATCTCCAGCCTCATTCCAATGCCAGCAGGGGACCACCTCTCTGGGTAGATGCGCACGTACTGAGACGGTACCTCCGGGAAGCGTCTGATCTCAGGAGTGTCATAGTGGGTGTTCCCTTCAAAGATCTTGGAGTGCATGATCTTCGTGTCCATGATGAAGTCCCAGTCCTTGCCGTTCATACTGTAGGCCACGCGGTACTTCCTGACGAAGGCTCGGTTATCTGTGTTGGTGCTGCCCTCTCCTCCCCGAGCACCCTGGGTGATGACCCCCTTCACCATCTTGGGGACGCCAAGGTCTACTTGCAGCCACTCCTCTCCGGCCAGGGGCTGCGAGGGGCTGGGGAACCACCCCGAACGGCTGGCCACCAGACGGGCAGCGCCAGGGGACCAGTGGATGTCTCGCGCTGATGAGGCTGAGATCTGGGAGTCGGGGATAAGCCCGGACAGCATGCCCTGCATTTCAGAGCAGGGGGCGTCTGTG

Function

NR:

description
PREDICTED: neuropilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162949 True 497 lncRNA 0.61 2 21456019 21456860

Neighbor

gene id symbol gene type direction distance location
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 102578 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 115731 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 140373 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 229177 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 252447 21181637 ~ 21203572 (+)
AMCG00001259 NA coding downstream 595010 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 703531 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 845670 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 927860 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 1083490 22540350 ~ 22542253 (+)
G129961 NA non-coding upstream 46328 21408934 ~ 21409691 (+)
G129904 NA non-coding upstream 214451 21241337 ~ 21241568 (+)
G129756 NA non-coding upstream 859267 20596431 ~ 20596752 (+)
G129719 NA non-coding upstream 1150162 20305643 ~ 20305857 (+)
G129708 LOC107575789 non-coding upstream 1360952 19995027 ~ 20095067 (+)
G129984 NA non-coding downstream 84603 21541463 ~ 21541672 (+)
G129985 NA non-coding downstream 94570 21551430 ~ 21554095 (+)
G129989 NA non-coding downstream 150980 21607840 ~ 21608250 (+)
G129993 NA non-coding downstream 196069 21652929 ~ 21653141 (+)
G129997 NA non-coding downstream 229723 21686583 ~ 21686858 (+)
G129913 NA other upstream 179140 21271384 ~ 21276879 (+)
G129877 NA other upstream 377149 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 513622 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 530779 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 779162 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 514439 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 733048 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 1043175 22500035 ~ 22530836 (+)
G130335 NA other downstream 1709403 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 2108291 23565151 ~ 23685121 (+)

Expression


Co-expression Network