G129985


Basic Information

Item Value
gene id G129985
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21551430 ~ 21554095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162964
ttccattacatttaatgcaaaatgtgataaaaaacaacaacaacatattaatAATGAGCAATCATTCTACTTAATGTTACATAATCAAAAACTTATATAATCTTAATTTCAGAACAGAGTAGGGGTtggacaaaaatataaacatggcTTGAAGTTAATACATGGCATTTGTGTCATGTTTATATTGCTGAATTAGAAAGGAATCcgaaaatgtcattaaaaaacattgagGTTCTGTTTGTTCTTTCAGCTCGAACTTTCTGTCGAGAAGGTATGATCATTGTTCACGGATCGTTAGGTAAAGTCCTTCATATGTGGTCAAGTGGCGAACAGGGCGTGAGTTTTTGATTCTGCAGCTTTCAGCAGGCTGGGAATACAATAGGCCCCATAGGTCATGTCCAAATGGATGCTGGTACGCACTGGTTTCAGCCCGGTTGATGAGACTGATTGAATAGAGGTCCAAGACACAACAGTGGCGGCTAAAATAAGGATTGTAACTCTTAGCCTGGCATCTAAAACCCTACCCACTCAATCAGGGTGTACCTGAGAGCTTCTGTGCATCGCTGAGATCGGAGCACTTCAAAAACTATTcaaagcaagacaaaataagcaaaaataccacaatacaaaaaaaatacacatccatccatccatcattCAATTTCTGCAAAGGCACAATTGTATCTCTAAGCATAGTTCACAGGTTGTATGATCTTCCCTATCATCACTTCATGCTTCACAGTCCAGCTCATTCAATGACCTGCATCCATACGCCCAAAAACCCTGGTAGGCcgatgtattattttgtttgtttgtttttccaactGGATATTCCAAAGTTCCTGCAtttcttgtttctgtgtttctttcatGTCCTCCATTCAGGTGAGAAGAGAGACACACTGCCTAGAACGAGCTGGCCAGGTGGAAAAAGTCAGTCCCTTTGAAGCAGGTATGGAGACGCCTCCACTCCTTCCTTCCTTGGCCCTCACACATGCAGATGGGTTATTCCACTCTGCGTCAAAGATCACAGAGATGACATTTCATTGGAATAGGCCCCATCCTGTTCGTAGTTCAGTTCATTCCTCCACCTGTCTCTTCTGGGAACAACCCGCTGCTGGCTGAGGTGTCAGTGTTCACGCACTTTAACCTTCATATCCACGCGCCGTGTTTCTCTCAGGCAGGTGAAGATGGAGTTGCTTGTTTTTGTCAGCTCAAGACGTGAGTACATGTCATTTATAAtcatgtagaaaaaaaataaaaagtggaagCATACAATGGCACACATAATCAACATCAACTAGGAATAATAATGGCAAAGGAGCTGGAACTCAAGATTAGTACCTTTCATTTTGATTCTGTTTGCGTCATGAAATAACATTTGGCAAATTATCCTTTATTCTGGAGGAAGAGTCGAACCAGCTCATTCAATTCCCTATGTTCAAGAGCTGTGCTTTGTTAATGGAAATGGTCACAATAGGCAAGTTGAGGTTGTAGCTATATGGCACAATAATTATCTCAAATGCATCCAAATTATCTGGCCACACAATTTCACATTGCCCTCTTAAGCACACAAATTACCAGCTTAGATAGCAAGTAGAGCTTGGCATTCAAAAACACTATTTTCCGAGTTTGATTGTATAGGCCACCCCACCATGCTGTATGCCACCATATTGTGGcgaaaaatcacatttaaaaaagttccAAAAAGGTGTCAAATGATCTTGCATACAATCTCTGTCAAAAAACAGCTTTCTCAAAAGGCACCTTCCCTGTGGTTGGTTTGGATGAATCGTCTGGTTGAGGGAGTCAATATGAATTATGCTGCAAAATTATGGATTGACAAATAAAAGGTAACTGTCTCAGTCTTAATATGTAACCAAAAGATTCATAGCAAGAGCAGAATACTCAAACacaagatgatgatgatgatgataataataataataataatgataataataataataataataataataataataataataataataataaatcataataaaattatCTTATATCATTTCACTTCAGTTGATACATTGCTTTGAGTTAGCAAAAAAAGTGtgacaaatagaaaatgtaagcCCAATCGCTGACCCTTGTAAAACCaaaattataatgaaagaaaaattaaacaaagacacagattagtctgcatatatatatatatatatatatatatatacacacacgagagCCTTCATTTGCGTGTCCTGCTCTGACGCCATGCGGGGGTTAAACTGCTGCGGTCATGGGGTTCTTCTGCCGGGTGTCAGGGTGCCGGTTGTCTCTGTAGTTGTAGTGCTCTGGACTGGCATTGTGGTAGCCCCCTCTGTTCAAGGTGTCGTATCGGGGGGTTCGAAGTTGGAGTGGAGGGGAGGGCGGTACGTCTTGGCGCAGTGGGCCGCGTTGCTGGGGTTGGGGGTAGTACCTGGGCTCCCCCTGCCTGGGGTCCATCCCCCGGCGCGGGGCAGGGCAGGGATAGTTTCCCCGGGAAGAGGGGTACGGGGGGAATGCAGGCTGAGCCCCAGGTAAGTGCGAGGGATCCCTCTCGGGCGGTCCGCCCCACGGCTGCATGGGATACTCGCTGGGGTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162964 True 2606 lncRNA 0.42 2 21551430 21554095

Neighbor

gene id symbol gene type direction distance location
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 197989 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 211142 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 235784 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 324588 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 347858 21181637 ~ 21203572 (+)
AMCG00001259 NA coding downstream 497775 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 606296 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 748435 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 830625 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 986255 22540350 ~ 22542253 (+)
G129984 NA non-coding upstream 9758 21541463 ~ 21541672 (+)
G129972 LOC106582529,LOC105005782 non-coding upstream 94570 21456019 ~ 21456860 (+)
G129961 NA non-coding upstream 141739 21408934 ~ 21409691 (+)
G129904 NA non-coding upstream 309862 21241337 ~ 21241568 (+)
G129756 NA non-coding upstream 954678 20596431 ~ 20596752 (+)
G129989 NA non-coding downstream 53745 21607840 ~ 21608250 (+)
G129993 NA non-coding downstream 98834 21652929 ~ 21653141 (+)
G129997 NA non-coding downstream 132488 21686583 ~ 21686858 (+)
G129998 NA non-coding downstream 156230 21710325 ~ 21710914 (+)
G130002 NA non-coding downstream 267630 21821725 ~ 21822894 (+)
G129913 NA other upstream 274551 21271384 ~ 21276879 (+)
G129877 NA other upstream 472560 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 609033 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 626190 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 874573 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 417204 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 635813 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 945940 22500035 ~ 22530836 (+)
G130335 NA other downstream 1612168 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 2011056 23565151 ~ 23685121 (+)

Expression


Co-expression Network