G130002


Basic Information

Item Value
gene id G130002
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21821725 ~ 21822894 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162982
CATTACAGAACAGTTCATTCTTTTGTGCTTTTATACCTGTCATATCATTTAGACAAGAGAAAGGATACAAAAAGTCAATTTACCTGTTCTAGAAGTTTCATGTATCTCTGGGTGGCTTGTTGAATCAAATCTCTGACTGTCCACCCATCTCTGCAGGGAACAACCACGCCAGTCTTCCCAAAAATGACCGTAACTTTCATCTTCTGCTAATTTTCATTCGCAAACTCGGAGATTTccgcccccccccaaaaaaaagtgCAGGTTTCCAATTGTGTGTAGAGCCCTGGGTACAGTGTATCACCGCGGCTCCCTGCTCAGCTCATGTCAGGGGAGGAAGCAACAGGTGTCCTttggcaataaaaaaaaaaaagagagagaaataagatGTAGCCCTcaaaaaacaactgaatatATCGAAAGCAGTTCAGTAATGTTGTACCTTCAGATCAATCCAATAAGTGAAACGCGTGGATCAACCCCAAACCGGAAGCAGAGTTGTTTTCACGGCAGATTCGCCTCTGATTTCAAACCCATATTACGCAACTCAAAAACACTGTCCTCACTAGGTGTATTTGAGGATTGCGTGTTGTTTTAAAGATCTTATTGATGTATAGCTCGCAGTCATAAGAGGtgttgtgtctgtatatatgcgCTTGTGATGTCCACAACACGCTAATGTTCAACACAACCACAACGGCAAGCGTCCAGCAGCCCCGCGGACCCGTCCGATGTCCCGCTGAGGCTCAGATCCACTTCATCCGGACACACCGTGGTCTCATCGATGGAGTCCGGGGTGTGGGTGAAGGCCTGAGACTTGGGCGATGGTGCCCATAGTGCTGCAGTTAAGTTTCCAGTTTTCCCTTCTCTCCGTTCACAATTTCCACTTCCTCCTTTTTCACAGATCGACTTTCCTTTCTTCCCCGGGTGCACTCAGGCCCCTGCAGGTTAGATGTGTCACGCCGAGGTTTAAATAGCTTTCCTCCTTTAAACAAGACAATCCACAAACTCTGCAGTTTTTCACCAAAAGTGACCCAAACTCCTCCACACAGCACTCAAACTCGGTCCTCCAGCGTACACTTTATTAAAGCGACAGTACGCCAATACAGCGCAGTCTCCCTGCAGAGCTGCATAGTGAAACCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162982 True 1141 lncRNA 0.46 2 21821725 21822894

Neighbor

gene id symbol gene type direction distance location
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 468284 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 481437 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 506079 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 594883 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 618153 21181637 ~ 21203572 (+)
AMCG00001259 NA coding downstream 228976 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 337497 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 479636 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 561826 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 717456 22540350 ~ 22542253 (+)
G129998 NA non-coding upstream 110811 21710325 ~ 21710914 (+)
G129997 NA non-coding upstream 134867 21686583 ~ 21686858 (+)
G129993 NA non-coding upstream 168584 21652929 ~ 21653141 (+)
G129989 NA non-coding upstream 213475 21607840 ~ 21608250 (+)
G129985 NA non-coding upstream 267630 21551430 ~ 21554095 (+)
G130008 NA non-coding downstream 1364 21824258 ~ 21824598 (+)
G130010 LOC107575789,LOC100846954 non-coding downstream 3351 21826245 ~ 21866625 (+)
G130014 NA non-coding downstream 87139 21910033 ~ 21950803 (+)
G130090 NA non-coding downstream 379136 22202030 ~ 22205125 (+)
G130125 NA non-coding downstream 503746 22326640 ~ 22326878 (+)
G129913 NA other upstream 544846 21271384 ~ 21276879 (+)
G129877 NA other upstream 742855 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 879328 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 896485 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 1144868 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 148405 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 367014 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 677141 22500035 ~ 22530836 (+)
G130335 NA other downstream 1343369 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1742257 23565151 ~ 23685121 (+)

Expression


Co-expression Network