G130010 (LOC107575789,LOC100846954)


Basic Information

Item Value
gene id G130010
gene name LOC107575789,LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21826245 ~ 21866625 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162991
tgaatgattcagaagAGAACtaggtgaaagtgttgtggtcagatgagaccaaaatcaagctctttggcatcaactcaactcgccgtgtttggtggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcTTGGATGGGT

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162991 True 295 lncRNA 0.50 2 21826245 21866625

Neighbor

gene id symbol gene type direction distance location
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 472804 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 485957 21319470 ~ 21340288 (+)
AMCG00001252 cnppd1 coding upstream 510599 21304273 ~ 21315646 (+)
AMCG00001249 abcb6a,abcb6 coding upstream 599403 21224605 ~ 21226842 (+)
AMCG00001250 LOC105905614 coding upstream 622673 21181637 ~ 21203572 (+)
AMCG00001259 NA coding downstream 185245 22051870 ~ 22083241 (+)
AMCG00001265 NA coding downstream 293766 22160391 ~ 22169050 (+)
AMCG00001271 NA coding downstream 435905 22302530 ~ 22321173 (+)
AMCG00001272 NA coding downstream 518095 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 673725 22540350 ~ 22542253 (+)
G130008 NA non-coding upstream 1647 21824258 ~ 21824598 (+)
G130002 NA non-coding upstream 3351 21821725 ~ 21822894 (+)
G129998 NA non-coding upstream 115331 21710325 ~ 21710914 (+)
G129997 NA non-coding upstream 139387 21686583 ~ 21686858 (+)
G129993 NA non-coding upstream 173104 21652929 ~ 21653141 (+)
G130014 NA non-coding downstream 43408 21910033 ~ 21950803 (+)
G130090 NA non-coding downstream 335405 22202030 ~ 22205125 (+)
G130125 NA non-coding downstream 460015 22326640 ~ 22326878 (+)
G130152 NA non-coding downstream 715691 22582316 ~ 22582621 (+)
G130153 NA non-coding downstream 716073 22582698 ~ 22582964 (+)
G129913 NA other upstream 549366 21271384 ~ 21276879 (+)
G129877 NA other upstream 747375 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 883848 20942072 ~ 20942397 (+)
AMCG00001241 NA other upstream 901005 20906371 ~ 20925240 (+)
AMCG00001236 LOC105905668,LOC108414761 other upstream 1149388 20611272 ~ 20676857 (+)
AMCG00001260 NA other downstream 104674 21971299 ~ 21992332 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other downstream 323283 22189908 ~ 22238654 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 633410 22500035 ~ 22530836 (+)
G130335 NA other downstream 1299638 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1698526 23565151 ~ 23685121 (+)

Expression


Co-expression Network