G130125


Basic Information

Item Value
gene id G130125
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22326640 ~ 22326878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163121
CAGCCACTGTCTTCTGTTCCAAGACAAGCTGGGGGAAATAACTGTGAAAGCGTAGCCCCGTGTTGTTTGCGTCTCTGCTAAGATGATCTGTTGACTCACAAACCAAACCATGAACCAAATCAGTGATGTATATCGAATGCACAACAGtcgcaataatattaataatcagaGCTTTGACAATTTCTCTCCATCCCGAACCTTCCTTTTCAGTTCCATTGTGTGTTAACGTTTGAGAGAAA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163121 True 239 lncRNA 0.42 1 22326640 22326878

Neighbor

gene id symbol gene type direction distance location
AMCG00001271 NA coding upstream 5467 22302530 ~ 22321173 (+)
AMCG00001265 NA coding upstream 157590 22160391 ~ 22169050 (+)
AMCG00001259 NA coding upstream 243399 22051870 ~ 22083241 (+)
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 973199 21343867 ~ 21353441 (+)
AMCG00001253 ttll4,LOC102787029 coding upstream 986352 21319470 ~ 21340288 (+)
AMCG00001272 NA coding downstream 57842 22384720 ~ 22450890 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding downstream 213472 22540350 ~ 22542253 (+)
AMCG00001275 ercc3,LOC107706662 coding downstream 224262 22551140 ~ 22565620 (+)
AMCG00001276 NA coding downstream 257149 22584027 ~ 22607255 (+)
AMCG00001279 NA coding downstream 319235 22646113 ~ 22752856 (+)
G130090 NA non-coding upstream 121515 22202030 ~ 22205125 (+)
G130014 NA non-coding upstream 375837 21910033 ~ 21950803 (+)
G130010 LOC107575789,LOC100846954 non-coding upstream 460015 21826245 ~ 21866625 (+)
G130008 NA non-coding upstream 502042 21824258 ~ 21824598 (+)
G130002 NA non-coding upstream 503746 21821725 ~ 21822894 (+)
G130152 NA non-coding downstream 255438 22582316 ~ 22582621 (+)
G130153 NA non-coding downstream 255820 22582698 ~ 22582964 (+)
G130144 NA non-coding downstream 288406 22615284 ~ 22616157 (+)
G130160 NA non-coding downstream 298080 22624958 ~ 22625203 (+)
G130166 NA non-coding downstream 472219 22799097 ~ 22805058 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 87986 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 334308 21971299 ~ 21992332 (+)
G129913 NA other upstream 1049761 21271384 ~ 21276879 (+)
G129877 NA other upstream 1247770 21077135 ~ 21078870 (+)
G129843 LOC107575789 other upstream 1384243 20942072 ~ 20942397 (+)
AMCG00001278 ercc3,LOC107706662 other downstream 173157 22500035 ~ 22530836 (+)
G130335 NA other downstream 839385 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1238273 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 2097687 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 2106915 24433793 ~ 24454385 (+)

Expression


Co-expression Network